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PyDISH No: 19390

PDB: 9jpb,
chainID: C, resSeq: 401
heme type: C

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.8 Å
origomeric count: 39

axial ligand #1: MET

chainID: C,
resSeq: 144,
Coordination distance[Å]: 1.52
molecule: Photosynthetic reaction center cytochrome c subunit
Organism: Dinoroseobacter shibae DFL 12 = DSM 16493

axial ligand #2: HIS

chainID: C,
resSeq: 173,
Coordination distance[Å]: 2.594
molecule: same as ligand #1

List of other hemes in pdb:9jpb

ID of heme Distortion Axial ligands on heme Function & structure
9jpb-C-402
sad. +0.15
ruf. -0.38
dom. +0.04
bre. -0.02
MET chainID: C,
resSeq: 255,
molecule: Photosynthetic reaction center cytochrome c subunit
electron transporter
oligomeric count: 39
pocket vol.: 410.0 Å3
d(Fe-oop): 0.008 Å
HIS chainID: C, resSeq: 270,
molecule: Photosynthetic reaction center cytochrome c subunit
9jpb-C-403
sad. -0.13
ruf. -0.13
dom. -0.14
bre. -0.04
HIS chainID: C,
resSeq: 158,
molecule: Photosynthetic reaction center cytochrome c subunit
electron transporter
oligomeric count: 39
pocket vol.: 330.0 Å3
d(Fe-oop): 0.055 Å
HIS chainID: C, resSeq: 332,
molecule: Photosynthetic reaction center cytochrome c subunit