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PyDISH No: 19317

PDB: 9hzl,
chainID: V, resSeq: 401
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.52 Å
origomeric count: 22

axial ligand #1: HIS

chainID: V,
resSeq: 83,
Coordination distance[Å]: 2.506
molecule: Cytochrome b
Organism: Homo sapiens

axial ligand #2: HIS

chainID: V,
resSeq: 182,
Coordination distance[Å]: 1.812
molecule: same as ligand #1

List of other hemes in pdb:9hzl

ID of heme Distortion Axial ligands on heme Function & structure
9hzl-H-401
sad. -0.18
ruf. -0.69
dom. +0.76
bre. -0.11
HIS chainID: H,
resSeq: 125,
molecule: Cytochrome c1, heme protein, mitochondrial
translocase
oligomeric count: 22
pocket vol.: 517.0 Å3
d(Fe-oop): 0.109 Å
MET chainID: H, resSeq: 244,
molecule: Cytochrome c1, heme protein, mitochondrial
9hzl-J-401
sad. +0.10
ruf. -0.18
dom. +0.02
bre. -0.15
HIS chainID: J,
resSeq: 83,
molecule: Cytochrome b
electron transporter
oligomeric count: 22
pocket vol.: 486.0 Å3
d(Fe-oop): 0.294 Å
HIS chainID: J, resSeq: 182,
molecule: Cytochrome b
9hzl-J-402
sad. -0.62
ruf. -0.31
dom. +0.22
bre. -0.14
HIS chainID: J,
resSeq: 97,
molecule: Cytochrome b
electron transporter
oligomeric count: 22
pocket vol.: 462.0 Å3
d(Fe-oop): 0.003 Å
HIS chainID: J, resSeq: 196,
molecule: Cytochrome b
9hzl-U-402
sad. +0.10
ruf. -1.08
dom. +0.34
bre. -0.08
HIS chainID: U,
resSeq: 125,
molecule: Cytochrome c1, heme protein, mitochondrial
translocase
oligomeric count: 22
pocket vol.: 512.0 Å3
d(Fe-oop): 0.043 Å
MET chainID: U, resSeq: 244,
molecule: Cytochrome c1, heme protein, mitochondrial
9hzl-V-402
sad. -0.70
ruf. -0.60
dom. +0.31
bre. -0.12
HIS chainID: V,
resSeq: 97,
molecule: Cytochrome b
electron transporter
oligomeric count: 22
pocket vol.: 478.0 Å3
d(Fe-oop): 0.110 Å
HIS chainID: V, resSeq: 196,
molecule: Cytochrome b