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PyDISH No: 19284

PDB: 9n5a,
chainID: U, resSeq: 201
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: ELECTRON MICROSCOPY
resolution: 2.96 Å
origomeric count: 24

axial ligand #1: MET

chainID: U,
resSeq: 52,
Coordination distance[Å]: 2.057
molecule: Bacterioferritin
EC number: 1.16.3.1
Organism: Azotobacter vinelandii

axial ligand #2: MET

chainID: V,
resSeq: 52,
Coordination distance[Å]: 2.838
molecule: Bacterioferritin
EC number: 1.16.3.1
Organism: Azotobacter vinelandii

List of other hemes in pdb:9n5a

ID of heme Distortion Axial ligands on heme Function & structure
9n5a-A-3001
sad. -0.13
ruf. -0.17
dom. -0.33
bre. -0.21
MET chainID: A,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 533.0 Å3
d(Fe-oop): 0.355 Å
MET chainID: B, resSeq: 52,
molecule: Bacterioferritin
9n5a-D-201
sad. -0.08
ruf. -0.16
dom. -0.14
bre. -0.22
MET chainID: C,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 523.0 Å3
d(Fe-oop): 0.273 Å
MET chainID: D, resSeq: 52,
molecule: Bacterioferritin
9n5a-E-201
sad. -0.18
ruf. +0.20
dom. +0.41
bre. -0.19
MET chainID: E,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 543.0 Å3
d(Fe-oop): 0.340 Å
MET chainID: F, resSeq: 52,
molecule: Bacterioferritin
9n5a-H-201
sad. -0.12
ruf. +0.17
dom. +0.08
bre. -0.21
MET chainID: H,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 521.0 Å3
d(Fe-oop): 0.020 Å
Not assigned.
9n5a-I-3001
sad. -0.13
ruf. -0.17
dom. -0.33
bre. -0.21
MET chainID: I,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 497.0 Å3
d(Fe-oop): 0.355 Å
MET chainID: J, resSeq: 52,
molecule: Bacterioferritin
9n5a-L-201
sad. -0.10
ruf. -0.18
dom. -0.15
bre. -0.22
MET chainID: K,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 524.0 Å3
d(Fe-oop): 0.271 Å
MET chainID: L, resSeq: 52,
molecule: Bacterioferritin
9n5a-M-201
sad. -0.18
ruf. +0.21
dom. +0.42
bre. -0.19
MET chainID: M,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 538.0 Å3
d(Fe-oop): 0.341 Å
MET chainID: N, resSeq: 52,
molecule: Bacterioferritin
9n5a-P-201
sad. -0.13
ruf. +0.17
dom. +0.09
bre. -0.21
MET chainID: P,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 537.0 Å3
d(Fe-oop): 0.025 Å
Not assigned.
9n5a-Q-3001
sad. -0.13
ruf. -0.17
dom. -0.33
bre. -0.21
MET chainID: Q,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 528.0 Å3
d(Fe-oop): 0.355 Å
MET chainID: R, resSeq: 52,
molecule: Bacterioferritin
9n5a-T-201
sad. -0.08
ruf. -0.16
dom. -0.13
bre. -0.22
MET chainID: S,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 528.0 Å3
d(Fe-oop): 0.272 Å
MET chainID: T, resSeq: 52,
molecule: Bacterioferritin
9n5a-X-201
sad. -0.12
ruf. +0.17
dom. +0.08
bre. -0.21
MET chainID: X,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 513.0 Å3
d(Fe-oop): 0.020 Å
Not assigned.