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PyDISH No: 19190

PDB: 9g83,
chainID: d, resSeq: 503
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 6.98 Å
origomeric count: 40

axial ligand #1: HIS

chainID: d,
resSeq: 111,
Coordination distance[Å]: 2.06
molecule: Cytochrome b
Organism: Paracoccus denitrificans PD1222

axial ligand #2: HIS

chainID: d,
resSeq: 212,
Coordination distance[Å]: 2.039
molecule: same as ligand #1

List of other hemes in pdb:9g83

ID of heme	Distortion	Axial ligands on heme		Function & structure
9g83-a-503	`sad. +0.08 ruf. -0.96 dom. +0.45 bre. +0.43`	HIS	chainID: a, resSeq: 111, molecule: Cytochrome b	electron transporter oligomeric count: 40 pocket vol.: 410.0 Å³ d(Fe-oop): 0.017 Å
9g83-a-503	`sad. +0.08 ruf. -0.96 dom. +0.45 bre. +0.43`	HIS	chainID: a, resSeq: 212, molecule: Cytochrome b
9g83-a-505	`sad. +0.01 ruf. -0.37 dom. -0.34 bre. +0.42`	HIS	chainID: a, resSeq: 97, molecule: Cytochrome b	electron transporter oligomeric count: 40 pocket vol.: 432.0 Å³ d(Fe-oop): 0.188 Å
9g83-a-505	`sad. +0.01 ruf. -0.37 dom. -0.34 bre. +0.42`	HIS	chainID: a, resSeq: 198, molecule: Cytochrome b
9g83-b-502	`sad. -0.07 ruf. -0.63 dom. +0.47 bre. +0.29`	HIS	chainID: b, resSeq: 249, molecule: Cytochrome c1	electron transporter oligomeric count: 40 pocket vol.: 410.0 Å³ d(Fe-oop): 0.080 Å
9g83-b-502	`sad. -0.07 ruf. -0.63 dom. +0.47 bre. +0.29`	MET	chainID: b, resSeq: 373, molecule: Cytochrome c1
9g83-d-502	`sad. -0.03 ruf. -0.70 dom. -0.13 bre. +0.36`	HIS	chainID: d, resSeq: 97, molecule: Cytochrome b	electron transporter oligomeric count: 40 pocket vol.: 432.0 Å³ d(Fe-oop): 0.000 Å
9g83-d-502	`sad. -0.03 ruf. -0.70 dom. -0.13 bre. +0.36`	HIS	chainID: d, resSeq: 198, molecule: Cytochrome b
9g83-e-502	`sad. +0.14 ruf. +0.07 dom. +0.22 bre. +0.18`	HIS	chainID: e, resSeq: 249, molecule: Cytochrome c1	electron transporter oligomeric count: 40 pocket vol.: 407.0 Å³ d(Fe-oop): 0.064 Å
9g83-e-502	`sad. +0.14 ruf. +0.07 dom. +0.22 bre. +0.18`	MET	chainID: e, resSeq: 373, molecule: Cytochrome c1
9g83-g-602	`sad. +0.01 ruf. +0.00 dom. +0.01 bre. +0.12`	HIS	chainID: g, resSeq: 411, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 40 pocket vol.: 763.0 Å³ d(Fe-oop): 0.016 Å
9g83-g-602	`sad. +0.01 ruf. +0.00 dom. +0.01 bre. +0.12`	Not assigned.
9g83-g-603	`sad. -0.00 ruf. +0.00 dom. -0.00 bre. +0.16`	HIS	chainID: g, resSeq: 94, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 40 pocket vol.: 626.0 Å³ d(Fe-oop): 0.004 Å
9g83-g-603	`sad. -0.00 ruf. +0.00 dom. -0.00 bre. +0.16`	HIS	chainID: g, resSeq: 413, molecule: Cytochrome c oxidase subunit 1
9g83-k-601	`sad. +0.01 ruf. +0.00 dom. +0.00 bre. +0.08`	HIS	chainID: k, resSeq: 94, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 40 pocket vol.: 632.0 Å³ d(Fe-oop): 0.015 Å
9g83-k-601	`sad. +0.01 ruf. +0.00 dom. +0.00 bre. +0.08`	HIS	chainID: k, resSeq: 413, molecule: Cytochrome c oxidase subunit 1
9g83-k-602	`sad. -0.10 ruf. -0.04 dom. +0.51 bre. -0.23`	HIS	chainID: k, resSeq: 411, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 40 pocket vol.: 775.0 Å³ d(Fe-oop): 0.201 Å
9g83-k-602	`sad. -0.10 ruf. -0.04 dom. +0.51 bre. -0.23`	Not assigned.
9g83-t-602	`sad. +1.66 ruf. +0.04 dom. -0.22 bre. +0.17`	HIS	chainID: t, resSeq: 409, molecule: cytochrome-c oxidase	translocase oligomeric count: 40 pocket vol.: 351.0 Å³ d(Fe-oop): 0.076 Å
9g83-t-602	`sad. +1.66 ruf. +0.04 dom. -0.22 bre. +0.17`	CU	chainID: t, resSeq: 601, molecule: COPPER (II) ION
9g83-t-603	`sad. -0.06 ruf. -0.08 dom. +0.09 bre. -0.07`	HIS	chainID: t, resSeq: 122, molecule: cytochrome-c oxidase	translocase oligomeric count: 40 pocket vol.: 358.0 Å³ d(Fe-oop): 0.176 Å
9g83-t-603	`sad. -0.06 ruf. -0.08 dom. +0.09 bre. -0.07`	HIS	chainID: t, resSeq: 411, molecule: cytochrome-c oxidase
9g83-u-1000	`sad. +0.77 ruf. +0.34 dom. -0.20 bre. -0.04`	HIS	chainID: u, resSeq: 72, molecule: Cytochrome c oxidase, cbb3-type, subunit II	electron transporter oligomeric count: 40 pocket vol.: 360.0 Å³ d(Fe-oop): 0.040 Å
9g83-u-1000	`sad. +0.77 ruf. +0.34 dom. -0.20 bre. -0.04`	MET	chainID: u, resSeq: 140, molecule: Cytochrome c oxidase, cbb3-type, subunit II
9g83-v-1001	`sad. -0.04 ruf. -1.04 dom. +0.41 bre. +0.02`	HIS	chainID: v, resSeq: 185, molecule: Cbb3-type cytochrome c oxidase subunit CcoP	electron transporter oligomeric count: 40 pocket vol.: 355.0 Å³ d(Fe-oop): 0.204 Å
9g83-v-1001	`sad. -0.04 ruf. -1.04 dom. +0.41 bre. +0.02`	MET	chainID: v, resSeq: 323, molecule: Cbb3-type cytochrome c oxidase subunit CcoP
9g83-v-1002	`sad. +0.02 ruf. -0.32 dom. +0.20 bre. -0.17`	MET	chainID: v, resSeq: 233, molecule: Cbb3-type cytochrome c oxidase subunit CcoP	electron transporter oligomeric count: 40 pocket vol.: 322.0 Å³ d(Fe-oop): 0.006 Å
9g83-v-1002	`sad. +0.02 ruf. -0.32 dom. +0.20 bre. -0.17`	HIS	chainID: v, resSeq: 282, molecule: Cbb3-type cytochrome c oxidase subunit CcoP