Browser

PyDISH No: 19127

PDB: 9l08,
chainID: A, resSeq: 401
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 1.6 Å
origomeric count: 2

axial ligand #1: HIS

chainID: A,
resSeq: 61,
Coordination distance[Å]: 1.993
molecule: Covalently Connected Cytochrome c555 trimer
Organism: Aquifex aeolicus VF5

axial ligand #2: MET

chainID: A,
resSeq: 107,
Coordination distance[Å]: 2.366
molecule: same as ligand #1

List of other hemes in pdb:9l08

ID of heme Distortion Axial ligands on heme Function & structure
9l08-A-402
sad. +0.36
ruf. -0.42
dom. -0.08
bre. -0.16
HIS chainID: A,
resSeq: 158,
molecule: Covalently Connected Cytochrome c555 trimer
electron transporter
oligomeric count: 2
pocket vol.: 350.0 Å3
d(Fe-oop): 0.002 Å
MET chainID: A, resSeq: 204,
molecule: Covalently Connected Cytochrome c555 trimer
9l08-A-403
sad. +0.30
ruf. -0.41
dom. -0.07
bre. -0.13
MET chainID: A,
resSeq: 10,
molecule: Covalently Connected Cytochrome c555 trimer
electron transporter
oligomeric count: 2
pocket vol.: 344.0 Å3
d(Fe-oop): 0.000 Å
HIS chainID: A, resSeq: 255,
molecule: Covalently Connected Cytochrome c555 trimer
9l08-B-401
sad. +0.27
ruf. -0.45
dom. -0.06
bre. -0.14
HIS chainID: B,
resSeq: 61,
molecule: Covalently Connected Cytochrome c555 trimer
electron transporter
oligomeric count: 2
pocket vol.: 342.0 Å3
d(Fe-oop): 0.002 Å
MET chainID: B, resSeq: 107,
molecule: Covalently Connected Cytochrome c555 trimer
9l08-B-402
sad. +0.21
ruf. -0.51
dom. -0.06
bre. -0.16
HIS chainID: B,
resSeq: 158,
molecule: Covalently Connected Cytochrome c555 trimer
electron transporter
oligomeric count: 2
pocket vol.: 346.0 Å3
d(Fe-oop): 0.002 Å
MET chainID: B, resSeq: 204,
molecule: Covalently Connected Cytochrome c555 trimer
9l08-B-403
sad. +0.31
ruf. -0.56
dom. -0.05
bre. -0.13
MET chainID: B,
resSeq: 10,
molecule: Covalently Connected Cytochrome c555 trimer
electron transporter
oligomeric count: 2
pocket vol.: 365.0 Å3
d(Fe-oop): 0.042 Å
HIS chainID: B, resSeq: 255,
molecule: Covalently Connected Cytochrome c555 trimer