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PyDISH No: 19105

PDB: 9fks,
chainID: d, resSeq: 505
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 4.31 Å
origomeric count: 16

axial ligand #1: HIS

chainID: d,
resSeq: 97,
Coordination distance[Å]: 2.086
molecule: Cytochrome b
Organism: Paracoccus denitrificans PD1222

axial ligand #2: HIS

chainID: d,
resSeq: 198,
Coordination distance[Å]: 2.167
molecule: same as ligand #1

List of other hemes in pdb:9fks

ID of heme	Distortion	Axial ligands on heme		Function & structure
9fks-a-504	`sad. -0.52 ruf. -0.54 dom. +0.28 bre. +0.19`	HIS	chainID: a, resSeq: 111, molecule: Cytochrome b	electron transporter oligomeric count: 16 pocket vol.: 436.0 Å³ d(Fe-oop): 0.099 Å
9fks-a-504	`sad. -0.52 ruf. -0.54 dom. +0.28 bre. +0.19`	HIS	chainID: a, resSeq: 212, molecule: Cytochrome b
9fks-a-505	`sad. -0.14 ruf. +0.24 dom. +0.19 bre. +0.15`	HIS	chainID: a, resSeq: 97, molecule: Cytochrome b	electron transporter oligomeric count: 16 pocket vol.: 443.0 Å³ d(Fe-oop): 0.016 Å
9fks-a-505	`sad. -0.14 ruf. +0.24 dom. +0.19 bre. +0.15`	HIS	chainID: a, resSeq: 198, molecule: Cytochrome b
9fks-b-503	`sad. +0.08 ruf. -0.34 dom. +0.03 bre. +0.09`	HIS	chainID: b, resSeq: 249, molecule: Cytochrome c1	electron transporter oligomeric count: 16 pocket vol.: 454.0 Å³ d(Fe-oop): 0.039 Å
9fks-b-503	`sad. +0.08 ruf. -0.34 dom. +0.03 bre. +0.09`	MET	chainID: b, resSeq: 373, molecule: Cytochrome c1
9fks-d-504	`sad. -0.32 ruf. -0.95 dom. +0.47 bre. +0.24`	HIS	chainID: d, resSeq: 111, molecule: Cytochrome b	electron transporter oligomeric count: 16 pocket vol.: 434.0 Å³ d(Fe-oop): 0.175 Å
9fks-d-504	`sad. -0.32 ruf. -0.95 dom. +0.47 bre. +0.24`	HIS	chainID: d, resSeq: 212, molecule: Cytochrome b
9fks-e-503	`sad. -0.31 ruf. -0.71 dom. +0.34 bre. +0.14`	HIS	chainID: e, resSeq: 249, molecule: Cytochrome c1	electron transporter oligomeric count: 16 pocket vol.: 440.0 Å³ d(Fe-oop): 0.175 Å
9fks-e-503	`sad. -0.31 ruf. -0.71 dom. +0.34 bre. +0.14`	MET	chainID: e, resSeq: 373, molecule: Cytochrome c1
9fks-g-603	`sad. -0.01 ruf. +0.01 dom. +0.01 bre. +0.12`	HIS	chainID: g, resSeq: 94, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 16 pocket vol.: 622.0 Å³ d(Fe-oop): 0.031 Å
9fks-g-603	`sad. -0.01 ruf. +0.01 dom. +0.01 bre. +0.12`	HIS	chainID: g, resSeq: 413, molecule: Cytochrome c oxidase subunit 1
9fks-g-605	`sad. -0.00 ruf. +0.01 dom. +0.01 bre. +0.09`	HIS	chainID: g, resSeq: 411, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 16 pocket vol.: 722.0 Å³ d(Fe-oop): 0.025 Å
9fks-g-605	`sad. -0.00 ruf. +0.01 dom. +0.01 bre. +0.09`	Not assigned.
9fks-k-601	`sad. -0.00 ruf. +0.01 dom. +0.01 bre. +0.10`	HIS	chainID: k, resSeq: 411, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 16 pocket vol.: 731.0 Å³ d(Fe-oop): 0.028 Å
9fks-k-601	`sad. -0.00 ruf. +0.01 dom. +0.01 bre. +0.10`	Not assigned.
9fks-k-606	`sad. -0.01 ruf. +0.01 dom. -0.00 bre. +0.11`	HIS	chainID: k, resSeq: 94, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 16 pocket vol.: 652.0 Å³ d(Fe-oop): 0.022 Å
9fks-k-606	`sad. -0.01 ruf. +0.01 dom. -0.00 bre. +0.11`	HIS	chainID: k, resSeq: 413, molecule: Cytochrome c oxidase subunit 1