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PyDISH No: 19056

PDB: 9fzl,
chainID: 3c, resSeq: 301
heme type: C

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.2 Å
origomeric count: 98

axial ligand #1: HIS

chainID: 3c,
resSeq: 77,
Coordination distance[Å]: 2.194
molecule: Iso-1-cytochrome c
Organism: Perkinsus marinus

axial ligand #2: MET

chainID: 3c,
resSeq: 196,
Coordination distance[Å]: 2.151
molecule: same as ligand #1

List of other hemes in pdb:9fzl

ID of heme Distortion Axial ligands on heme Function & structure
9fzl-3C-301
sad. -0.02
ruf. -0.24
dom. -0.21
bre. +0.02
HIS chainID: 3C,
resSeq: 77,
molecule: Iso-1-cytochrome c
electron transporter
oligomeric count: 98
pocket vol.: 388.0 Å3
d(Fe-oop): 0.081 Å
MET chainID: 3C, resSeq: 196,
molecule: Iso-1-cytochrome c
9fzl-3G-401
sad. +0.04
ruf. -0.10
dom. +0.11
bre. -0.06
HIS chainID: 3G,
resSeq: 71,
molecule: Cytochrome b
electron transporter
oligomeric count: 98
pocket vol.: 454.0 Å3
d(Fe-oop): 0.045 Å
HIS chainID: 3G, resSeq: 167,
molecule: Cytochrome b
9fzl-3G-402
sad. -0.52
ruf. -0.36
dom. +0.03
bre. -0.06
HIS chainID: 3G,
resSeq: 85,
molecule: Cytochrome b
electron transporter
oligomeric count: 98
pocket vol.: 398.0 Å3
d(Fe-oop): 0.043 Å
HIS chainID: 3G, resSeq: 181,
molecule: Cytochrome b
9fzl-4Q-904
sad. -0.01
ruf. +0.00
dom. +0.00
bre. +0.02
HIS chainID: 4Q,
resSeq: 464,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 98
pocket vol.: 726.0 Å3
d(Fe-oop): 0.001 Å
HIS chainID: 4Q, resSeq: 772,
molecule: Cytochrome c oxidase subunit 1
9fzl-4Q-905
sad. +0.00
ruf. -0.00
dom. +0.01
bre. -0.02
HIS chainID: 4Q,
resSeq: 770,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 98
pocket vol.: 731.0 Å3
d(Fe-oop): 0.006 Å
PER chainID: 4Q, resSeq: 906,
molecule: PEROXIDE ION
9fzl-3g-401
sad. +0.04
ruf. -0.10
dom. +0.11
bre. -0.06
HIS chainID: 3g,
resSeq: 71,
molecule: Cytochrome b
electron transporter
oligomeric count: 98
pocket vol.: 463.0 Å3
d(Fe-oop): 0.046 Å
HIS chainID: 3g, resSeq: 167,
molecule: Cytochrome b
9fzl-3g-402
sad. -0.52
ruf. -0.36
dom. +0.03
bre. -0.06
HIS chainID: 3g,
resSeq: 85,
molecule: Cytochrome b
electron transporter
oligomeric count: 98
pocket vol.: 398.0 Å3
d(Fe-oop): 0.043 Å
HIS chainID: 3g, resSeq: 181,
molecule: Cytochrome b
9fzl-4q-904
sad. -0.01
ruf. +0.00
dom. +0.00
bre. +0.02
HIS chainID: 4q,
resSeq: 464,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 98
pocket vol.: 722.0 Å3
d(Fe-oop): 0.001 Å
HIS chainID: 4q, resSeq: 772,
molecule: Cytochrome c oxidase subunit 1
9fzl-4q-905
sad. +0.00
ruf. -0.00
dom. +0.01
bre. -0.02
HIS chainID: 4q,
resSeq: 770,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 98
pocket vol.: 712.0 Å3
d(Fe-oop): 0.006 Å
PER chainID: 4q, resSeq: 906,
molecule: PEROXIDE ION