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PyDISH No: 18695

PDB: 9f62,
chainID: 8A, resSeq: 604
heme type: A

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 5.44 Å
origomeric count: 214

axial ligand #1: HIS

chainID: 8A,
resSeq: 370,
Coordination distance[Å]: 2.444
molecule: Cytochrome c oxidase subunit 1
EC number: 7.1.1.9
Organism: Chlamydomonas reinhardtii

List of other hemes in pdb:9f62

ID of heme Distortion Axial ligands on heme Function & structure
9f62-1A-401
 sad. -0.14
ruf. +0.09
dom. +0.21
bre. -0.10
 HIS chainID: 1A,
resSeq: 82,
molecule: Cytochrome b		 electron transporter
oligomeric count: 214
pocket vol.: 476.0 Å3
d(Fe-oop): 0.339 Å
HIS chainID: 1A, resSeq: 183,
molecule: Cytochrome b
9f62-1A-402
 sad. -0.50
ruf. -0.64
dom. +0.03
bre. -0.02
 HIS chainID: 1A,
resSeq: 96,
molecule: Cytochrome b		 electron transporter
oligomeric count: 214
pocket vol.: 440.0 Å3
d(Fe-oop): 0.208 Å
HIS chainID: 1A, resSeq: 197,
molecule: Cytochrome b
9f62-1B-401
 sad. -0.08
ruf. +0.46
dom. +0.33
bre. -0.12
 HIS chainID: 1B,
resSeq: 82,
molecule: Cytochrome b		 electron transporter
oligomeric count: 214
pocket vol.: 435.0 Å3
d(Fe-oop): 0.230 Å
HIS chainID: 1B, resSeq: 183,
molecule: Cytochrome b
9f62-1B-402
 sad. -0.55
ruf. -0.51
dom. +0.04
bre. -0.06
 HIS chainID: 1B,
resSeq: 96,
molecule: Cytochrome b		 electron transporter
oligomeric count: 214
pocket vol.: 455.0 Å3
d(Fe-oop): 0.217 Å
HIS chainID: 1B, resSeq: 197,
molecule: Cytochrome b
9f62-1E-401
 sad. +0.23
ruf. -0.34
dom. +0.04
bre. -0.15
 HIS chainID: 1E,
resSeq: 114,
molecule: Cytochrome c1		 oxidoreductase
oligomeric count: 214
pocket vol.: 486.0 Å3
d(Fe-oop): 0.352 Å
MET chainID: 1E, resSeq: 233,
molecule: Cytochrome c1
9f62-1F-501
 sad. +0.35
ruf. -0.51
dom. +0.26
bre. -0.13
 HIS chainID: 1F,
resSeq: 114,
molecule: Cytochrome c1		 oxidoreductase
oligomeric count: 214
pocket vol.: 487.0 Å3
d(Fe-oop): 0.238 Å
MET chainID: 1F, resSeq: 233,
molecule: Cytochrome c1
9f62-2A-601
 sad. -0.68
ruf. +0.53
dom. +0.42
bre. -0.48
 HIS chainID: 2A,
resSeq: 60,
molecule: Cytochrome c oxidase subunit 1		 translocase
oligomeric count: 214
pocket vol.: 688.0 Å3
d(Fe-oop): 0.090 Å
HIS chainID: 2A, resSeq: 372,
molecule: Cytochrome c oxidase subunit 1
9f62-2A-602
 sad. -0.43
ruf. +0.20
dom. +0.50
bre. -0.52
 HIS chainID: 2A,
resSeq: 370,
molecule: Cytochrome c oxidase subunit 1		 translocase
oligomeric count: 214
pocket vol.: 778.0 Å3
d(Fe-oop): 0.015 Å
Not assigned.
9f62-3A-601
 sad. -0.41
ruf. +0.04
dom. +0.47
bre. -0.50
 HIS chainID: 3A,
resSeq: 370,
molecule: Cytochrome c oxidase subunit 1		 translocase
oligomeric count: 214
pocket vol.: 798.0 Å3
d(Fe-oop): 0.024 Å
Not assigned.
9f62-3A-604
 sad. -0.60
ruf. +0.50
dom. +0.53
bre. -0.44
 HIS chainID: 3A,
resSeq: 60,
molecule: Cytochrome c oxidase subunit 1		 translocase
oligomeric count: 214
pocket vol.: 693.0 Å3
d(Fe-oop): 0.042 Å
HIS chainID: 3A, resSeq: 372,
molecule: Cytochrome c oxidase subunit 1
9f62-4A-602
 sad. -0.60
ruf. +0.50
dom. +0.53
bre. -0.44
 HIS chainID: 4A,
resSeq: 60,
molecule: Cytochrome c oxidase subunit 1		 translocase
oligomeric count: 214
pocket vol.: 680.0 Å3
d(Fe-oop): 0.043 Å
HIS chainID: 4A, resSeq: 372,
molecule: Cytochrome c oxidase subunit 1
9f62-4A-604
 sad. -0.41
ruf. +0.04
dom. +0.47
bre. -0.50
 HIS chainID: 4A,
resSeq: 370,
molecule: Cytochrome c oxidase subunit 1		 translocase
oligomeric count: 214
pocket vol.: 786.0 Å3
d(Fe-oop): 0.023 Å
Not assigned.
9f62-6A-401
 sad. -0.51
ruf. -0.64
dom. +0.03
bre. -0.02
 HIS chainID: 6A,
resSeq: 96,
molecule: Cytochrome b		 electron transporter
oligomeric count: 214
pocket vol.: 440.0 Å3
d(Fe-oop): 0.208 Å
HIS chainID: 6A, resSeq: 197,
molecule: Cytochrome b
9f62-6A-402
 sad. -0.14
ruf. +0.09
dom. +0.21
bre. -0.10
 HIS chainID: 6A,
resSeq: 82,
molecule: Cytochrome b		 electron transporter
oligomeric count: 214
pocket vol.: 470.0 Å3
d(Fe-oop): 0.338 Å
HIS chainID: 6A, resSeq: 183,
molecule: Cytochrome b
9f62-6B-401
 sad. -0.08
ruf. +0.46
dom. +0.33
bre. -0.12
 HIS chainID: 6B,
resSeq: 82,
molecule: Cytochrome b		 electron transporter
oligomeric count: 214
pocket vol.: 455.0 Å3
d(Fe-oop): 0.230 Å
HIS chainID: 6B, resSeq: 183,
molecule: Cytochrome b
9f62-6B-402
 sad. -0.55
ruf. -0.51
dom. +0.04
bre. -0.06
 HIS chainID: 6B,
resSeq: 96,
molecule: Cytochrome b		 electron transporter
oligomeric count: 214
pocket vol.: 445.0 Å3
d(Fe-oop): 0.216 Å
HIS chainID: 6B, resSeq: 197,
molecule: Cytochrome b
9f62-6E-401
 sad. +0.24
ruf. -0.34
dom. +0.04
bre. -0.15
 HIS chainID: 6E,
resSeq: 114,
molecule: Cytochrome c1		 oxidoreductase
oligomeric count: 214
pocket vol.: 498.0 Å3
d(Fe-oop): 0.353 Å
MET chainID: 6E, resSeq: 233,
molecule: Cytochrome c1
9f62-6F-501
 sad. +0.35
ruf. -0.51
dom. +0.26
bre. -0.13
 HIS chainID: 6F,
resSeq: 114,
molecule: Cytochrome c1		 oxidoreductase
oligomeric count: 214
pocket vol.: 484.0 Å3
d(Fe-oop): 0.237 Å
MET chainID: 6F, resSeq: 233,
molecule: Cytochrome c1
9f62-7A-601
 sad. -0.43
ruf. +0.20
dom. +0.50
bre. -0.52
 HIS chainID: 7A,
resSeq: 370,
molecule: Cytochrome c oxidase subunit 1		 translocase
oligomeric count: 214
pocket vol.: 761.0 Å3
d(Fe-oop): 0.015 Å
Not assigned.
9f62-7A-602
 sad. -0.68
ruf. +0.53
dom. +0.42
bre. -0.48
 HIS chainID: 7A,
resSeq: 60,
molecule: Cytochrome c oxidase subunit 1		 translocase
oligomeric count: 214
pocket vol.: 673.0 Å3
d(Fe-oop): 0.089 Å
HIS chainID: 7A, resSeq: 372,
molecule: Cytochrome c oxidase subunit 1
9f62-8A-601
 sad. -0.60
ruf. +0.50
dom. +0.53
bre. -0.44
 HIS chainID: 8A,
resSeq: 60,
molecule: Cytochrome c oxidase subunit 1		 translocase
oligomeric count: 214
pocket vol.: 680.0 Å3
d(Fe-oop): 0.042 Å
HIS chainID: 8A, resSeq: 372,
molecule: Cytochrome c oxidase subunit 1
9f62-9A-602
 sad. -0.41
ruf. +0.04
dom. +0.47
bre. -0.50
 HIS chainID: 9A,
resSeq: 370,
molecule: Cytochrome c oxidase subunit 1		 translocase
oligomeric count: 214
pocket vol.: 804.0 Å3
d(Fe-oop): 0.023 Å
Not assigned.
9f62-9A-603
 sad. -0.60
ruf. +0.50
dom. +0.53
bre. -0.44
 HIS chainID: 9A,
resSeq: 60,
molecule: Cytochrome c oxidase subunit 1		 translocase
oligomeric count: 214
pocket vol.: 691.0 Å3
d(Fe-oop): 0.042 Å
HIS chainID: 9A, resSeq: 372,
molecule: Cytochrome c oxidase subunit 1