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PyDISH No: 18679

PDB: 9f62,
chainID: 1F, resSeq: 501
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: ELECTRON MICROSCOPY
resolution: 5.44 Å
origomeric count: 214

axial ligand #1: HIS

chainID: 1F,
resSeq: 114,
Coordination distance[Å]: 2.005
molecule: Cytochrome c1
EC number: 1.10.2.2
Organism: Chlamydomonas reinhardtii

axial ligand #2: MET

chainID: 1F,
resSeq: 233,
Coordination distance[Å]: 3.076
molecule: same as ligand #1

List of other hemes in pdb:9f62

ID of heme	Distortion	Axial ligands on heme		Function & structure
9f62-1A-401	`sad. -0.14 ruf. +0.09 dom. +0.21 bre. -0.10`	HIS	chainID: 1A, resSeq: 82, molecule: Cytochrome b	electron transporter oligomeric count: 214 pocket vol.: 476.0 Å³ d(Fe-oop): 0.339 Å
9f62-1A-401	`sad. -0.14 ruf. +0.09 dom. +0.21 bre. -0.10`	HIS	chainID: 1A, resSeq: 183, molecule: Cytochrome b
9f62-1A-402	`sad. -0.50 ruf. -0.64 dom. +0.03 bre. -0.02`	HIS	chainID: 1A, resSeq: 96, molecule: Cytochrome b	electron transporter oligomeric count: 214 pocket vol.: 440.0 Å³ d(Fe-oop): 0.208 Å
9f62-1A-402	`sad. -0.50 ruf. -0.64 dom. +0.03 bre. -0.02`	HIS	chainID: 1A, resSeq: 197, molecule: Cytochrome b
9f62-1B-401	`sad. -0.08 ruf. +0.46 dom. +0.33 bre. -0.12`	HIS	chainID: 1B, resSeq: 82, molecule: Cytochrome b	electron transporter oligomeric count: 214 pocket vol.: 435.0 Å³ d(Fe-oop): 0.230 Å
9f62-1B-401	`sad. -0.08 ruf. +0.46 dom. +0.33 bre. -0.12`	HIS	chainID: 1B, resSeq: 183, molecule: Cytochrome b
9f62-1B-402	`sad. -0.55 ruf. -0.51 dom. +0.04 bre. -0.06`	HIS	chainID: 1B, resSeq: 96, molecule: Cytochrome b	electron transporter oligomeric count: 214 pocket vol.: 455.0 Å³ d(Fe-oop): 0.217 Å
9f62-1B-402	`sad. -0.55 ruf. -0.51 dom. +0.04 bre. -0.06`	HIS	chainID: 1B, resSeq: 197, molecule: Cytochrome b
9f62-1E-401	`sad. +0.23 ruf. -0.34 dom. +0.04 bre. -0.15`	HIS	chainID: 1E, resSeq: 114, molecule: Cytochrome c1	oxidoreductase oligomeric count: 214 pocket vol.: 486.0 Å³ d(Fe-oop): 0.352 Å
9f62-1E-401	`sad. +0.23 ruf. -0.34 dom. +0.04 bre. -0.15`	MET	chainID: 1E, resSeq: 233, molecule: Cytochrome c1
9f62-2A-601	`sad. -0.68 ruf. +0.53 dom. +0.42 bre. -0.48`	HIS	chainID: 2A, resSeq: 60, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 214 pocket vol.: 688.0 Å³ d(Fe-oop): 0.090 Å
9f62-2A-601	`sad. -0.68 ruf. +0.53 dom. +0.42 bre. -0.48`	HIS	chainID: 2A, resSeq: 372, molecule: Cytochrome c oxidase subunit 1
9f62-2A-602	`sad. -0.43 ruf. +0.20 dom. +0.50 bre. -0.52`	HIS	chainID: 2A, resSeq: 370, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 214 pocket vol.: 778.0 Å³ d(Fe-oop): 0.015 Å
9f62-2A-602	`sad. -0.43 ruf. +0.20 dom. +0.50 bre. -0.52`	Not assigned.
9f62-3A-601	`sad. -0.41 ruf. +0.04 dom. +0.47 bre. -0.50`	HIS	chainID: 3A, resSeq: 370, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 214 pocket vol.: 798.0 Å³ d(Fe-oop): 0.024 Å
9f62-3A-601	`sad. -0.41 ruf. +0.04 dom. +0.47 bre. -0.50`	Not assigned.
9f62-3A-604	`sad. -0.60 ruf. +0.50 dom. +0.53 bre. -0.44`	HIS	chainID: 3A, resSeq: 60, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 214 pocket vol.: 693.0 Å³ d(Fe-oop): 0.042 Å
9f62-3A-604	`sad. -0.60 ruf. +0.50 dom. +0.53 bre. -0.44`	HIS	chainID: 3A, resSeq: 372, molecule: Cytochrome c oxidase subunit 1
9f62-4A-602	`sad. -0.60 ruf. +0.50 dom. +0.53 bre. -0.44`	HIS	chainID: 4A, resSeq: 60, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 214 pocket vol.: 680.0 Å³ d(Fe-oop): 0.043 Å
9f62-4A-602	`sad. -0.60 ruf. +0.50 dom. +0.53 bre. -0.44`	HIS	chainID: 4A, resSeq: 372, molecule: Cytochrome c oxidase subunit 1
9f62-4A-604	`sad. -0.41 ruf. +0.04 dom. +0.47 bre. -0.50`	HIS	chainID: 4A, resSeq: 370, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 214 pocket vol.: 786.0 Å³ d(Fe-oop): 0.023 Å
9f62-4A-604	`sad. -0.41 ruf. +0.04 dom. +0.47 bre. -0.50`	Not assigned.
9f62-6A-401	`sad. -0.51 ruf. -0.64 dom. +0.03 bre. -0.02`	HIS	chainID: 6A, resSeq: 96, molecule: Cytochrome b	electron transporter oligomeric count: 214 pocket vol.: 440.0 Å³ d(Fe-oop): 0.208 Å
9f62-6A-401	`sad. -0.51 ruf. -0.64 dom. +0.03 bre. -0.02`	HIS	chainID: 6A, resSeq: 197, molecule: Cytochrome b
9f62-6A-402	`sad. -0.14 ruf. +0.09 dom. +0.21 bre. -0.10`	HIS	chainID: 6A, resSeq: 82, molecule: Cytochrome b	electron transporter oligomeric count: 214 pocket vol.: 470.0 Å³ d(Fe-oop): 0.338 Å
9f62-6A-402	`sad. -0.14 ruf. +0.09 dom. +0.21 bre. -0.10`	HIS	chainID: 6A, resSeq: 183, molecule: Cytochrome b
9f62-6B-401	`sad. -0.08 ruf. +0.46 dom. +0.33 bre. -0.12`	HIS	chainID: 6B, resSeq: 82, molecule: Cytochrome b	electron transporter oligomeric count: 214 pocket vol.: 455.0 Å³ d(Fe-oop): 0.230 Å
9f62-6B-401	`sad. -0.08 ruf. +0.46 dom. +0.33 bre. -0.12`	HIS	chainID: 6B, resSeq: 183, molecule: Cytochrome b
9f62-6B-402	`sad. -0.55 ruf. -0.51 dom. +0.04 bre. -0.06`	HIS	chainID: 6B, resSeq: 96, molecule: Cytochrome b	electron transporter oligomeric count: 214 pocket vol.: 445.0 Å³ d(Fe-oop): 0.216 Å
9f62-6B-402	`sad. -0.55 ruf. -0.51 dom. +0.04 bre. -0.06`	HIS	chainID: 6B, resSeq: 197, molecule: Cytochrome b
9f62-6E-401	`sad. +0.24 ruf. -0.34 dom. +0.04 bre. -0.15`	HIS	chainID: 6E, resSeq: 114, molecule: Cytochrome c1	oxidoreductase oligomeric count: 214 pocket vol.: 498.0 Å³ d(Fe-oop): 0.353 Å
9f62-6E-401	`sad. +0.24 ruf. -0.34 dom. +0.04 bre. -0.15`	MET	chainID: 6E, resSeq: 233, molecule: Cytochrome c1
9f62-6F-501	`sad. +0.35 ruf. -0.51 dom. +0.26 bre. -0.13`	HIS	chainID: 6F, resSeq: 114, molecule: Cytochrome c1	oxidoreductase oligomeric count: 214 pocket vol.: 484.0 Å³ d(Fe-oop): 0.237 Å
9f62-6F-501	`sad. +0.35 ruf. -0.51 dom. +0.26 bre. -0.13`	MET	chainID: 6F, resSeq: 233, molecule: Cytochrome c1
9f62-7A-601	`sad. -0.43 ruf. +0.20 dom. +0.50 bre. -0.52`	HIS	chainID: 7A, resSeq: 370, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 214 pocket vol.: 761.0 Å³ d(Fe-oop): 0.015 Å
9f62-7A-601	`sad. -0.43 ruf. +0.20 dom. +0.50 bre. -0.52`	Not assigned.
9f62-7A-602	`sad. -0.68 ruf. +0.53 dom. +0.42 bre. -0.48`	HIS	chainID: 7A, resSeq: 60, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 214 pocket vol.: 673.0 Å³ d(Fe-oop): 0.089 Å
9f62-7A-602	`sad. -0.68 ruf. +0.53 dom. +0.42 bre. -0.48`	HIS	chainID: 7A, resSeq: 372, molecule: Cytochrome c oxidase subunit 1
9f62-8A-601	`sad. -0.60 ruf. +0.50 dom. +0.53 bre. -0.44`	HIS	chainID: 8A, resSeq: 60, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 214 pocket vol.: 680.0 Å³ d(Fe-oop): 0.042 Å
9f62-8A-601	`sad. -0.60 ruf. +0.50 dom. +0.53 bre. -0.44`	HIS	chainID: 8A, resSeq: 372, molecule: Cytochrome c oxidase subunit 1
9f62-8A-604	`sad. -0.41 ruf. +0.04 dom. +0.47 bre. -0.50`	HIS	chainID: 8A, resSeq: 370, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 214 pocket vol.: 785.0 Å³ d(Fe-oop): 0.024 Å
9f62-8A-604	`sad. -0.41 ruf. +0.04 dom. +0.47 bre. -0.50`	Not assigned.
9f62-9A-602	`sad. -0.41 ruf. +0.04 dom. +0.47 bre. -0.50`	HIS	chainID: 9A, resSeq: 370, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 214 pocket vol.: 804.0 Å³ d(Fe-oop): 0.023 Å
9f62-9A-602	`sad. -0.41 ruf. +0.04 dom. +0.47 bre. -0.50`	Not assigned.
9f62-9A-603	`sad. -0.60 ruf. +0.50 dom. +0.53 bre. -0.44`	HIS	chainID: 9A, resSeq: 60, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 214 pocket vol.: 691.0 Å³ d(Fe-oop): 0.042 Å
9f62-9A-603	`sad. -0.60 ruf. +0.50 dom. +0.53 bre. -0.44`	HIS	chainID: 9A, resSeq: 372, molecule: Cytochrome c oxidase subunit 1