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PyDISH No: 18637

PDB: 9cg3,
chainID: J, resSeq: 401
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.96 Å
origomeric count: 20

axial ligand #1: HIS

chainID: J,
resSeq: 83,
Coordination distance[Å]: 1.793
molecule: Cytochrome b
Organism: Homo sapiens

axial ligand #2: HIS

chainID: J,
resSeq: 182,
Coordination distance[Å]: 2.544
molecule: same as ligand #1

List of other hemes in pdb:9cg3

ID of heme Distortion Axial ligands on heme Function & structure
9cg3-H-401
sad. -0.06
ruf. -1.60
dom. +0.25
bre. -0.44
HIS chainID: H,
resSeq: 125,
molecule: Cytochrome c1, heme protein, mitochondrial
translocase
oligomeric count: 20
pocket vol.: 455.0 Å3
d(Fe-oop): 0.092 Å
MET chainID: H, resSeq: 244,
molecule: Cytochrome c1, heme protein, mitochondrial
9cg3-J-402
sad. -0.66
ruf. -0.69
dom. +0.36
bre. -0.09
HIS chainID: J,
resSeq: 97,
molecule: Cytochrome b
electron transporter
oligomeric count: 20
pocket vol.: 398.0 Å3
d(Fe-oop): 0.111 Å
HIS chainID: J, resSeq: 196,
molecule: Cytochrome b
9cg3-U-401
sad. -0.06
ruf. -0.87
dom. +0.58
bre. -0.03
HIS chainID: U,
resSeq: 125,
molecule: Cytochrome c1, heme protein, mitochondrial
translocase
oligomeric count: 20
pocket vol.: 478.0 Å3
d(Fe-oop): 0.028 Å
MET chainID: U, resSeq: 244,
molecule: Cytochrome c1, heme protein, mitochondrial
9cg3-V-401
sad. -0.06
ruf. -0.38
dom. +0.00
bre. +0.01
HIS chainID: V,
resSeq: 83,
molecule: Cytochrome b
electron transporter
oligomeric count: 20
pocket vol.: 423.0 Å3
d(Fe-oop): 0.022 Å
HIS chainID: V, resSeq: 182,
molecule: Cytochrome b
9cg3-V-402
sad. -0.75
ruf. -0.63
dom. +0.32
bre. -0.10
HIS chainID: V,
resSeq: 97,
molecule: Cytochrome b
electron transporter
oligomeric count: 20
pocket vol.: 405.0 Å3
d(Fe-oop): 0.123 Å
HIS chainID: V, resSeq: 196,
molecule: Cytochrome b