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PyDISH No: 18629

PDB: 9krd,
chainID: D, resSeq: 101
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 1.7 Å

axial ligand #1: HIS

chainID: D,
resSeq: 18,
Coordination distance[Å]: 2.073
molecule: Cytochrome c6
Organism: Synechococcus elongatus PCC 7942 = FACHB-805

axial ligand #2: MET

chainID: D,
resSeq: 58,
Coordination distance[Å]: 2.371
molecule: same as ligand #1

List of other hemes in pdb:9krd

ID of heme Distortion Axial ligands on heme Function & structure
9krd-A-101
sad. +0.66
ruf. -0.52
dom. +0.16
bre. -0.12
HIS chainID: A,
resSeq: 18,
molecule: Cytochrome c6
electron transporter
oligomeric count: 2
pocket vol.: 361.0 Å3
d(Fe-oop): 0.046 Å
MET chainID: A, resSeq: 58,
molecule: Cytochrome c6
9krd-B-101
sad. +0.60
ruf. -0.49
dom. +0.13
bre. -0.09
HIS chainID: B,
resSeq: 18,
molecule: Cytochrome c6
electron transporter
oligomeric count: 2
pocket vol.: 337.0 Å3
d(Fe-oop): 0.059 Å
MET chainID: B, resSeq: 58,
molecule: Cytochrome c6
9krd-C-101
sad. +0.52
ruf. -0.51
dom. +0.18
bre. -0.07
HIS chainID: C,
resSeq: 18,
molecule: Cytochrome c6
electron transporter
oligomeric count: 2
pocket vol.: 335.0 Å3
d(Fe-oop): 0.070 Å
MET chainID: C, resSeq: 58,
molecule: Cytochrome c6