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PyDISH No: 18620

PDB: 9cdn,
chainID: 8, resSeq: 401
heme type: C

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 3.47 Å
origomeric count: 67

axial ligand #1: HIS

chainID: 8,
resSeq: 126,
Coordination distance[Å]: 2.089
molecule: Cytochrome c1
Organism: Sus scrofa

axial ligand #2: MET

chainID: 8,
resSeq: 245,
Coordination distance[Å]: 2.872
molecule: same as ligand #1

List of other hemes in pdb:9cdn

ID of heme Distortion Axial ligands on heme Function & structure
9cdn-7-401
sad. +0.03
ruf. -0.36
dom. -0.12
bre. +0.00
HIS chainID: 7,
resSeq: 83,
molecule: Cytochrome b
electron transporter
oligomeric count: 67
pocket vol.: 397.0 Å3
d(Fe-oop): 0.032 Å
HIS chainID: 7, resSeq: 182,
molecule: Cytochrome b
9cdn-7-402
sad. -0.48
ruf. -0.68
dom. +0.43
bre. -0.00
HIS chainID: 7,
resSeq: 97,
molecule: Cytochrome b
electron transporter
oligomeric count: 67
pocket vol.: 460.0 Å3
d(Fe-oop): 0.283 Å
HIS chainID: 7, resSeq: 196,
molecule: Cytochrome b
9cdn-w-401
sad. -0.46
ruf. -1.14
dom. +0.06
bre. +0.07
HIS chainID: w,
resSeq: 97,
molecule: Cytochrome b
electron transporter
oligomeric count: 67
pocket vol.: 429.0 Å3
d(Fe-oop): 0.267 Å
HIS chainID: w, resSeq: 196,
molecule: Cytochrome b
9cdn-w-402
sad. +0.21
ruf. -0.51
dom. +0.31
bre. -0.04
HIS chainID: w,
resSeq: 83,
molecule: Cytochrome b
electron transporter
oligomeric count: 67
pocket vol.: 449.0 Å3
d(Fe-oop): 0.016 Å
HIS chainID: w, resSeq: 182,
molecule: Cytochrome b
9cdn-x-401
sad. -0.18
ruf. +0.00
dom. +0.18
bre. -0.19
HIS chainID: x,
resSeq: 126,
molecule: Cytochrome c1
electron transporter
oligomeric count: 67
pocket vol.: 451.0 Å3
d(Fe-oop): 0.122 Å
MET chainID: x, resSeq: 245,
molecule: Cytochrome c1