Browser

PyDISH No: 18565

PDB: 9buh,
chainID: w, resSeq: 401
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.8 Å
origomeric count: 80

axial ligand #1: HIS

chainID: w,
resSeq: 97,
Coordination distance[Å]: 2.822
molecule: Cytochrome b
Organism: Sus scrofa

axial ligand #2: HIS

chainID: w,
resSeq: 196,
Coordination distance[Å]: 2.795
molecule: same as ligand #1

List of other hemes in pdb:9buh

ID of heme Distortion Axial ligands on heme Function & structure
9buh-Ak-601
sad. -0.09
ruf. +0.96
dom. +0.24
bre. +0.06
HIS chainID: Ak,
resSeq: 61,
molecule: Cytochrome c oxidase subunit 1
electron transporter
oligomeric count: 80
pocket vol.: 660.0 Å3
d(Fe-oop): 0.107 Å
HIS chainID: Ak, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1
9buh-Ak-602
sad. -0.14
ruf. -0.15
dom. +0.32
bre. -0.04
HIS chainID: Ak,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
electron transporter
oligomeric count: 80
pocket vol.: 729.0 Å3
d(Fe-oop): 0.130 Å
Not assigned.
9buh-7-401
sad. -0.05
ruf. -0.48
dom. -0.31
bre. -0.15
HIS chainID: 7,
resSeq: 83,
molecule: Cytochrome b
electron transporter
oligomeric count: 80
pocket vol.: 399.0 Å3
d(Fe-oop): 0.331 Å
HIS chainID: 7, resSeq: 182,
molecule: Cytochrome b
9buh-7-402
sad. -0.67
ruf. -0.78
dom. +0.15
bre. -0.06
HIS chainID: 7,
resSeq: 97,
molecule: Cytochrome b
electron transporter
oligomeric count: 80
pocket vol.: 412.0 Å3
d(Fe-oop): 0.075 Å
HIS chainID: 7, resSeq: 196,
molecule: Cytochrome b
9buh-8-401
sad. -0.28
ruf. -0.77
dom. +0.14
bre. -0.19
HIS chainID: 8,
resSeq: 126,
molecule: Cytochrome c1
electron transporter
oligomeric count: 80
pocket vol.: 431.0 Å3
d(Fe-oop): 0.068 Å
MET chainID: 8, resSeq: 245,
molecule: Cytochrome c1
9buh-w-402
sad. +0.06
ruf. -0.51
dom. -0.12
bre. -0.08
HIS chainID: w,
resSeq: 83,
molecule: Cytochrome b
electron transporter
oligomeric count: 80
pocket vol.: 433.0 Å3
d(Fe-oop): 0.401 Å
HIS chainID: w, resSeq: 182,
molecule: Cytochrome b
9buh-x-401
sad. -0.20
ruf. -0.20
dom. +0.26
bre. -0.24
HIS chainID: x,
resSeq: 126,
molecule: Cytochrome c1
electron transporter
oligomeric count: 80
pocket vol.: 425.0 Å3
d(Fe-oop): 0.147 Å
MET chainID: x, resSeq: 245,
molecule: Cytochrome c1