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PyDISH No: 18554

PDB: 9bpb,
chainID: m, resSeq: 601
heme type: A

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 2.57 Å
origomeric count: 42

axial ligand #1: HIS

chainID: m,
resSeq: 62,
Coordination distance[Å]: 2.46
molecule: Cytochrome c oxidase subunit 1
EC number: 7.1.1.9
Organism: Saccharomyces cerevisiae W303

axial ligand #2: HIS

chainID: m,
resSeq: 378,
Coordination distance[Å]: 3.079
molecule: same as ligand #1

List of other hemes in pdb:9bpb

ID of heme	Distortion	Axial ligands on heme		Function & structure
9bpb-C-405	`sad. -0.22 ruf. -0.15 dom. +0.31 bre. +0.07`	HIS	chainID: C, resSeq: 96, molecule: Cytochrome b	translocase oligomeric count: 42 pocket vol.: 470.0 Å³ d(Fe-oop): 0.009 Å
9bpb-C-405	`sad. -0.22 ruf. -0.15 dom. +0.31 bre. +0.07`	HIS	chainID: C, resSeq: 197, molecule: Cytochrome b
9bpb-C-407	`sad. +0.00 ruf. +0.03 dom. +0.01 bre. +0.04`	HIS	chainID: C, resSeq: 82, molecule: Cytochrome b	translocase oligomeric count: 42 pocket vol.: 516.0 Å³ d(Fe-oop): 0.011 Å
9bpb-C-407	`sad. +0.00 ruf. +0.03 dom. +0.01 bre. +0.04`	HIS	chainID: C, resSeq: 183, molecule: Cytochrome b
9bpb-D-402	`sad. -0.12 ruf. -0.10 dom. -0.11 bre. -0.00`	HIS	chainID: D, resSeq: 105, molecule: Cytochrome c1, heme protein, mitochondrial	translocase oligomeric count: 42 pocket vol.: 507.0 Å³ d(Fe-oop): 0.035 Å
9bpb-D-402	`sad. -0.12 ruf. -0.10 dom. -0.11 bre. -0.00`	MET	chainID: D, resSeq: 225, molecule: Cytochrome c1, heme protein, mitochondrial
9bpb-a-601	`sad. -0.31 ruf. +0.12 dom. +0.23 bre. -0.55`	HIS	chainID: a, resSeq: 62, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 42 pocket vol.: 809.0 Å³ d(Fe-oop): 0.140 Å
9bpb-a-601	`sad. -0.31 ruf. +0.12 dom. +0.23 bre. -0.55`	HIS	chainID: a, resSeq: 378, molecule: Cytochrome c oxidase subunit 1
9bpb-a-603	`sad. -0.30 ruf. +0.06 dom. +0.33 bre. -0.50`	HIS	chainID: a, resSeq: 376, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 42 pocket vol.: 819.0 Å³ d(Fe-oop): 0.104 Å
9bpb-a-603	`sad. -0.30 ruf. +0.06 dom. +0.33 bre. -0.50`	Not assigned.
9bpb-M-404	`sad. -0.22 ruf. -0.15 dom. +0.31 bre. +0.07`	HIS	chainID: M, resSeq: 96, molecule: Cytochrome b	translocase oligomeric count: 42 pocket vol.: 466.0 Å³ d(Fe-oop): 0.009 Å
9bpb-M-404	`sad. -0.22 ruf. -0.15 dom. +0.31 bre. +0.07`	HIS	chainID: M, resSeq: 197, molecule: Cytochrome b
9bpb-M-406	`sad. +0.00 ruf. +0.03 dom. +0.01 bre. +0.04`	HIS	chainID: M, resSeq: 82, molecule: Cytochrome b	translocase oligomeric count: 42 pocket vol.: 497.0 Å³ d(Fe-oop): 0.011 Å
9bpb-M-406	`sad. +0.00 ruf. +0.03 dom. +0.01 bre. +0.04`	HIS	chainID: M, resSeq: 183, molecule: Cytochrome b
9bpb-N-402	`sad. -0.12 ruf. -0.10 dom. -0.11 bre. -0.00`	HIS	chainID: N, resSeq: 105, molecule: Cytochrome c1, heme protein, mitochondrial	translocase oligomeric count: 42 pocket vol.: 507.0 Å³ d(Fe-oop): 0.035 Å
9bpb-N-402	`sad. -0.12 ruf. -0.10 dom. -0.11 bre. -0.00`	MET	chainID: N, resSeq: 225, molecule: Cytochrome c1, heme protein, mitochondrial
9bpb-m-603	`sad. -0.30 ruf. +0.06 dom. +0.33 bre. -0.50`	HIS	chainID: m, resSeq: 376, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 42 pocket vol.: 788.0 Å³ d(Fe-oop): 0.104 Å
9bpb-m-603	`sad. -0.30 ruf. +0.06 dom. +0.33 bre. -0.50`	Not assigned.