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PyDISH No: 18491

PDB: 9cuf,
chainID: B, resSeq: 501
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 3.3 Å

axial ligand #1: LYS

chainID: B,
resSeq: 123,
Coordination distance[Å]: 2.83
molecule: Cytochrome c-552
EC number: 1.7.2.2
Organism: Shewanella oneidensis

List of other hemes in pdb:9cuf

ID of heme Distortion Axial ligands on heme Function & structure
9cuf-A-501
sad. +0.96
ruf. -1.64
dom. +0.11
bre. +0.08
LYS chainID: A,
resSeq: 123,
molecule: Cytochrome c-552
oxidoreductase
oligomeric count: 2
pocket vol.: 412.0 Å3
d(Fe-oop): 0.517 Å
Not assigned.
9cuf-A-502
sad. +0.73
ruf. +0.11
dom. +0.04
bre. -0.27
HIS chainID: A,
resSeq: 161,
molecule: Cytochrome c-552
oxidoreductase
oligomeric count: 2
pocket vol.: 451.0 Å3
d(Fe-oop): 0.015 Å
HIS chainID: A, resSeq: 294,
molecule: Cytochrome c-552
9cuf-A-503
sad. -0.26
ruf. -1.19
dom. -0.19
bre. -0.16
HIS chainID: A,
resSeq: 91,
molecule: Cytochrome c-552
oxidoreductase
oligomeric count: 2
pocket vol.: 438.0 Å3
d(Fe-oop): 0.006 Å
HIS chainID: A, resSeq: 203,
molecule: Cytochrome c-552
9cuf-A-504
sad. +0.00
ruf. -0.54
dom. +0.09
bre. -0.10
HIS chainID: A,
resSeq: 279,
molecule: Cytochrome c-552
oxidoreductase
oligomeric count: 2
pocket vol.: 506.0 Å3
d(Fe-oop): 0.187 Å
HIS chainID: A, resSeq: 386,
molecule: Cytochrome c-552
9cuf-A-505
sad. -0.01
ruf. -0.80
dom. +0.09
bre. -0.11
HIS chainID: A,
resSeq: 268,
molecule: Cytochrome c-552
oxidoreductase
oligomeric count: 2
pocket vol.: 489.0 Å3
d(Fe-oop): 0.154 Å
HIS chainID: A, resSeq: 311,
molecule: Cytochrome c-552
9cuf-B-502
sad. +0.33
ruf. -1.80
dom. -0.82
bre. +0.20
HIS chainID: B,
resSeq: 161,
molecule: Cytochrome c-552
oxidoreductase
oligomeric count: 2
pocket vol.: 461.0 Å3
d(Fe-oop): 0.191 Å
HIS chainID: B, resSeq: 294,
molecule: Cytochrome c-552
9cuf-B-503
sad. -0.38
ruf. -0.74
dom. +0.21
bre. -0.21
HIS chainID: B,
resSeq: 91,
molecule: Cytochrome c-552
oxidoreductase
oligomeric count: 2
pocket vol.: 439.0 Å3
d(Fe-oop): 0.191 Å
HIS chainID: B, resSeq: 203,
molecule: Cytochrome c-552
9cuf-B-504
sad. -0.52
ruf. -1.14
dom. +0.05
bre. -0.07
HIS chainID: B,
resSeq: 279,
molecule: Cytochrome c-552
oxidoreductase
oligomeric count: 2
pocket vol.: 503.0 Å3
d(Fe-oop): 0.131 Å
HIS chainID: B, resSeq: 386,
molecule: Cytochrome c-552
9cuf-B-505
sad. -0.28
ruf. -0.61
dom. +0.01
bre. +0.04
HIS chainID: B,
resSeq: 268,
molecule: Cytochrome c-552
oxidoreductase
oligomeric count: 2
pocket vol.: 497.0 Å3
d(Fe-oop): 0.096 Å
HIS chainID: B, resSeq: 311,
molecule: Cytochrome c-552