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PyDISH No: 18425

PDB: 9es8,
chainID: A, resSeq: 301
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.24 Å

axial ligand #1: HIS

chainID: A,
resSeq: 86,
Coordination distance[Å]: 2.326
molecule: Cytochrome b6
Organism: Spinacia oleracea

axial ligand #2: HIS

chainID: A,
resSeq: 187,
Coordination distance[Å]: 2.281
molecule: same as ligand #1

List of other hemes in pdb:9es8

ID of heme Distortion Axial ligands on heme Function & structure
9es8-A-302
sad. -0.76
ruf. -0.44
dom. +0.10
bre. -0.14
HIS chainID: A,
resSeq: 100,
molecule: Cytochrome b6
electron transporter
oligomeric count: 18
pocket vol.: 485.0 Å3
d(Fe-oop): 0.018 Å
HIS chainID: A, resSeq: 202,
molecule: Cytochrome b6
9es8-A-303
sad. +0.61
ruf. -0.14
dom. -0.15
bre. -0.22
HOH chainID: A,
resSeq: 413,
molecule: water
electron transporter
oligomeric count: 18
pocket vol.: 659.0 Å3
d(Fe-oop): 0.039 Å
Not assigned.
9es8-C-301
sad. -0.23
ruf. -0.67
dom. +0.03
bre. -0.20
TYR chainID: C,
resSeq: 1,
molecule: Cytochrome f
electron transporter
oligomeric count: 18
pocket vol.: 458.0 Å3
d(Fe-oop): 0.089 Å
HIS chainID: C, resSeq: 25,
molecule: Cytochrome f
9es8-I-301
sad. -0.10
ruf. +0.03
dom. +0.09
bre. -0.20
HIS chainID: I,
resSeq: 86,
molecule: Cytochrome b6
electron transporter
oligomeric count: 18
pocket vol.: 512.0 Å3
d(Fe-oop): 0.047 Å
HIS chainID: I, resSeq: 187,
molecule: Cytochrome b6
9es8-I-302
sad. -0.76
ruf. -0.44
dom. +0.10
bre. -0.14
HIS chainID: I,
resSeq: 100,
molecule: Cytochrome b6
electron transporter
oligomeric count: 18
pocket vol.: 518.0 Å3
d(Fe-oop): 0.018 Å
HIS chainID: I, resSeq: 202,
molecule: Cytochrome b6
9es8-I-303
sad. +0.61
ruf. -0.14
dom. -0.15
bre. -0.22
HOH chainID: I,
resSeq: 413,
molecule: water
electron transporter
oligomeric count: 18
pocket vol.: 660.0 Å3
d(Fe-oop): 0.039 Å
Not assigned.
9es8-K-301
sad. -0.23
ruf. -0.67
dom. +0.03
bre. -0.20
TYR chainID: K,
resSeq: 1,
molecule: Cytochrome f
electron transporter
oligomeric count: 18
pocket vol.: 470.0 Å3
d(Fe-oop): 0.089 Å
HIS chainID: K, resSeq: 25,
molecule: Cytochrome f