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PyDISH No: 18425

PDB: 8yz2,
chainID: C, resSeq: 403
heme type: C

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.68 Å
origomeric count: 39

axial ligand #1: HIS

chainID: C,
resSeq: 158,
Coordination distance[Å]: 1.917
molecule: Photosynthetic reaction center cytochrome c subunit
Organism: Dinoroseobacter shibae DFL 12 = DSM 16493

axial ligand #2: HIS

chainID: C,
resSeq: 332,
Coordination distance[Å]: 2.525
molecule: same as ligand #1

List of other hemes in pdb:8yz2

ID of heme Distortion Axial ligands on heme Function & structure
8yz2-C-401
sad. +0.01
ruf. +0.47
dom. -0.19
bre. -0.05
MET chainID: C,
resSeq: 144,
molecule: Photosynthetic reaction center cytochrome c subunit
electron transporter
oligomeric count: 39
pocket vol.: 307.0 Å3
d(Fe-oop): 0.045 Å
HIS chainID: C, resSeq: 173,
molecule: Photosynthetic reaction center cytochrome c subunit
8yz2-C-402
sad. -0.08
ruf. -0.01
dom. +0.39
bre. -0.03
HIS chainID: C,
resSeq: 270,
molecule: Photosynthetic reaction center cytochrome c subunit
electron transporter
oligomeric count: 39
pocket vol.: 354.0 Å3
d(Fe-oop): 0.070 Å
Not assigned.