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Protein data
function: translocaseexperiment: ELECTRON MICROSCOPY
resolution: 3.2 Å
axial ligand #1: HIS
chainID: R,resSeq: 86,
Coordination distance[Å]: 2.176
molecule: Cytochrome c oxidase subunit 1
EC number: 7.1.1.9
Organism: Mycolicibacterium smegmatis MC2 155
axial ligand #2: HIS
chainID: R,resSeq: 399,
Coordination distance[Å]: 2.345
molecule: same as ligand #1
List of other hemes in pdb:9dm1
| ID of heme | Distortion | Axial ligands on heme | Function & structure | |
|---|---|---|---|---|
9dm1-R-602 |
sad. -0.01 ruf. +0.00 dom. +0.00 bre. -0.07 |
HIS | chainID: R, resSeq: 397, molecule: Cytochrome c oxidase subunit 1 |
translocase oligomeric count: 25 pocket vol.: 764.0 Å3 d(Fe-oop): 0.005 Å |
| Not assigned. | ||||
9dm1-E-601 |
sad. -1.22 ruf. -0.68 dom. +0.14 bre. +0.01 |
HIS | chainID: E, resSeq: 123, molecule: Cytochrome bc1 complex cytochrome b subunit |
translocase oligomeric count: 25 pocket vol.: 345.0 Å3 d(Fe-oop): 0.146 Å |
| HIS | chainID: E, resSeq: 226, molecule: Cytochrome bc1 complex cytochrome b subunit |
|||
9dm1-E-602 |
sad. -0.59 ruf. -0.06 dom. +0.14 bre. -0.11 |
HIS | chainID: E, resSeq: 109, molecule: Cytochrome bc1 complex cytochrome b subunit |
translocase oligomeric count: 25 pocket vol.: 340.0 Å3 d(Fe-oop): 0.157 Å |
| HIS | chainID: E, resSeq: 211, molecule: Cytochrome bc1 complex cytochrome b subunit |
|||
9dm1-F-702 |
sad. -1.15 ruf. -0.69 dom. +0.09 bre. +0.00 |
HIS | chainID: F, resSeq: 123, molecule: Cytochrome bc1 complex cytochrome b subunit |
translocase oligomeric count: 25 pocket vol.: 336.0 Å3 d(Fe-oop): 0.144 Å |
| HIS | chainID: F, resSeq: 226, molecule: Cytochrome bc1 complex cytochrome b subunit |
|||
9dm1-F-703 |
sad. -0.60 ruf. +0.04 dom. +0.20 bre. -0.13 |
HIS | chainID: F, resSeq: 109, molecule: Cytochrome bc1 complex cytochrome b subunit |
translocase oligomeric count: 25 pocket vol.: 361.0 Å3 d(Fe-oop): 0.134 Å |
| HIS | chainID: F, resSeq: 211, molecule: Cytochrome bc1 complex cytochrome b subunit |
|||
9dm1-L-602 |
sad. -0.01 ruf. +0.00 dom. -0.00 bre. -0.07 |
HIS | chainID: L, resSeq: 397, molecule: Cytochrome c oxidase subunit 1 |
translocase oligomeric count: 25 pocket vol.: 723.0 Å3 d(Fe-oop): 0.005 Å |
| Not assigned. | ||||
9dm1-L-603 |
sad. -0.00 ruf. -0.00 dom. +0.00 bre. -0.04 |
HIS | chainID: L, resSeq: 86, molecule: Cytochrome c oxidase subunit 1 |
translocase oligomeric count: 25 pocket vol.: 646.0 Å3 d(Fe-oop): 0.001 Å |
| HIS | chainID: L, resSeq: 399, molecule: Cytochrome c oxidase subunit 1 |
|||
9dm1-O-301 |
sad. -0.11 ruf. -0.48 dom. +0.62 bre. -0.18 |
HIS | chainID: O, resSeq: 91, molecule: Cytochrome bc1 complex cytochrome c subunit |
translocase oligomeric count: 25 pocket vol.: 425.0 Å3 d(Fe-oop): 0.117 Å |
| MET | chainID: O, resSeq: 122, molecule: Cytochrome bc1 complex cytochrome c subunit |
|||
9dm1-O-302 |
sad. +0.48 ruf. -1.08 dom. +0.38 bre. -0.07 |
HIS | chainID: O, resSeq: 192, molecule: Cytochrome bc1 complex cytochrome c subunit |
translocase oligomeric count: 25 pocket vol.: 352.0 Å3 d(Fe-oop): 0.005 Å |
| MET | chainID: O, resSeq: 229, molecule: Cytochrome bc1 complex cytochrome c subunit |
|||
9dm1-I-301 |
sad. -0.04 ruf. -0.67 dom. +0.59 bre. -0.18 |
HIS | chainID: I, resSeq: 91, molecule: Cytochrome bc1 complex cytochrome c subunit |
translocase oligomeric count: 25 pocket vol.: 376.0 Å3 d(Fe-oop): 0.014 Å |
| MET | chainID: I, resSeq: 122, molecule: Cytochrome bc1 complex cytochrome c subunit |
|||
9dm1-I-302 |
sad. +0.33 ruf. -0.89 dom. +0.44 bre. -0.14 |
HIS | chainID: I, resSeq: 192, molecule: Cytochrome bc1 complex cytochrome c subunit |
translocase oligomeric count: 25 pocket vol.: 347.0 Å3 d(Fe-oop): 0.096 Å |
| MET | chainID: I, resSeq: 229, molecule: Cytochrome bc1 complex cytochrome c subunit |
|||