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PyDISH No: 18384

PDB: 8ydm,
chainID: C, resSeq: 503
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 3.05 Å
origomeric count: 18

axial ligand #1: MET

chainID: C,
resSeq: 283,
Coordination distance[Å]: 2.537
molecule: Cytochrome c-554
Organism: Chloroflexus aurantiacus J-10-fl

axial ligand #2: HIS

chainID: C,
resSeq: 298,
Coordination distance[Å]: 2.135
molecule: same as ligand #1

List of other hemes in pdb:8ydm

ID of heme Distortion Axial ligands on heme Function & structure
8ydm-C-501
 sad. +0.08
ruf. +0.02
dom. +0.35
bre. +0.11
 MET chainID: C,
resSeq: 119,
molecule: Cytochrome c-554		 electron transporter
oligomeric count: 18
pocket vol.: 419.0 Å3
d(Fe-oop): 0.169 Å
HIS chainID: C, resSeq: 135,
molecule: Cytochrome c-554
8ydm-C-502
 sad. -0.07
ruf. -0.02
dom. -0.25
bre. +0.09
 MET chainID: C,
resSeq: 154,
molecule: Cytochrome c-554		 electron transporter
oligomeric count: 18
pocket vol.: 461.0 Å3
d(Fe-oop): 0.128 Å
HIS chainID: C, resSeq: 183,
molecule: Cytochrome c-554
8ydm-C-504
 sad. +0.05
ruf. -0.65
dom. -0.22
bre. +0.11
 MET chainID: C,
resSeq: 330,
molecule: Cytochrome c-554		 electron transporter
oligomeric count: 18
pocket vol.: 368.0 Å3
d(Fe-oop): 0.123 Å
HIS chainID: C, resSeq: 382,
molecule: Cytochrome c-554