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PyDISH No: 18308

PDB: 9etz,
chainID: N, resSeq: 402
heme type: B

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 2.4 Å

axial ligand #1: HIS

chainID: N,
resSeq: 96,
Coordination distance[Å]: 2.301
molecule: Cytochrome b
EC number: 7.1.1.8
Organism: Saccharomyces cerevisiae

axial ligand #2: HIS

chainID: N,
resSeq: 197,
Coordination distance[Å]: 2.334
molecule: same as ligand #1

List of other hemes in pdb:9etz

ID of heme Distortion Axial ligands on heme Function & structure
9etz-C-401
sad. +0.22
ruf. -0.14
dom. -0.05
bre. -0.21
HIS chainID: C,
resSeq: 82,
molecule: Cytochrome b
translocase
oligomeric count: 32
pocket vol.: 487.0 Å3
d(Fe-oop): 0.057 Å
HIS chainID: C, resSeq: 183,
molecule: Cytochrome b
9etz-C-402
sad. -0.44
ruf. -0.43
dom. +0.19
bre. -0.14
HIS chainID: C,
resSeq: 96,
molecule: Cytochrome b
translocase
oligomeric count: 32
pocket vol.: 494.0 Å3
d(Fe-oop): 0.041 Å
HIS chainID: C, resSeq: 197,
molecule: Cytochrome b
9etz-D-401
sad. +0.16
ruf. -0.57
dom. +0.12
bre. -0.19
HIS chainID: D,
resSeq: 105,
molecule: Cytochrome c1, heme protein, mitochondrial
translocase
oligomeric count: 32
pocket vol.: 521.0 Å3
d(Fe-oop): 0.057 Å
MET chainID: D, resSeq: 225,
molecule: Cytochrome c1, heme protein, mitochondrial
9etz-N-401
sad. +0.17
ruf. -0.21
dom. +0.04
bre. -0.20
HIS chainID: N,
resSeq: 82,
molecule: Cytochrome b
translocase
oligomeric count: 32
pocket vol.: 511.0 Å3
d(Fe-oop): 0.042 Å
HIS chainID: N, resSeq: 183,
molecule: Cytochrome b
9etz-O-401
sad. +0.22
ruf. -0.63
dom. +0.33
bre. -0.17
HIS chainID: O,
resSeq: 105,
molecule: Cytochrome c1, heme protein, mitochondrial
translocase
oligomeric count: 32
pocket vol.: 525.0 Å3
d(Fe-oop): 0.039 Å
MET chainID: O, resSeq: 225,
molecule: Cytochrome c1, heme protein, mitochondrial
9etz-a-603
sad. -0.13
ruf. +0.23
dom. +0.08
bre. -0.05
HIS chainID: a,
resSeq: 62,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 32
pocket vol.: 743.0 Å3
d(Fe-oop): 0.052 Å
HIS chainID: a, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1
9etz-a-604
sad. -0.41
ruf. +0.10
dom. +0.47
bre. -0.50
HIS chainID: a,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 32
pocket vol.: 889.0 Å3
d(Fe-oop): 0.041 Å
Not assigned.