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PyDISH No: 18259

PDB: 8wdu,
chainID: C, resSeq: 401
heme type: C

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.24 Å

axial ligand #1: MET

chainID: C,
resSeq: 94,
Coordination distance[Å]: 2.667
molecule: Photosynthetic reaction center cytochrome c subunit
Organism: Allochromatium vinosum DSM 180

axial ligand #2: HIS

chainID: C,
resSeq: 111,
Coordination distance[Å]: 2.098
molecule: same as ligand #1

List of other hemes in pdb:8wdu

ID of heme Distortion Axial ligands on heme Function & structure
8wdu-C-402
sad. +0.13
ruf. -0.34
dom. +0.04
bre. +0.01
MET chainID: C,
resSeq: 130,
molecule: Photosynthetic reaction center cytochrome c subunit
electron transporter
oligomeric count: 36
pocket vol.: 317.0 Å3
d(Fe-oop): 0.017 Å
HIS chainID: C, resSeq: 156,
molecule: Photosynthetic reaction center cytochrome c subunit
8wdu-C-403
sad. +0.13
ruf. -0.55
dom. -0.12
bre. +0.04
MET chainID: C,
resSeq: 236,
molecule: Photosynthetic reaction center cytochrome c subunit
electron transporter
oligomeric count: 36
pocket vol.: 314.0 Å3
d(Fe-oop): 0.046 Å
HIS chainID: C, resSeq: 251,
molecule: Photosynthetic reaction center cytochrome c subunit
8wdu-C-404
sad. -0.14
ruf. +0.15
dom. +0.06
bre. -0.00
HIS chainID: C,
resSeq: 144,
molecule: Photosynthetic reaction center cytochrome c subunit
electron transporter
oligomeric count: 36
pocket vol.: 313.0 Å3
d(Fe-oop): 0.050 Å
HIS chainID: C, resSeq: 311,
molecule: Photosynthetic reaction center cytochrome c subunit