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PyDISH No: 18168

PDB: 8ugr,
chainID: 6D, resSeq: 501
heme type: C

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 6.5 Å

axial ligand #1: HIS

chainID: 6D,
resSeq: 129,
Coordination distance[Å]: 1.716
molecule: Cytochrome c1
Organism: Sus scrofa

axial ligand #2: MET

chainID: 6D,
resSeq: 249,
Coordination distance[Å]: 2.949
molecule: same as ligand #1

List of other hemes in pdb:8ugr

ID of heme	Distortion	Axial ligands on heme		Function & structure
8ugr-3C-501	`sad. +0.01 ruf. -0.57 dom. +0.07 bre. +0.06`	HIS	chainID: 3C, resSeq: 83, molecule: Cytochrome b	electron transporter oligomeric count: 162 pocket vol.: 408.0 Å³ d(Fe-oop): 0.024 Å
8ugr-3C-501	`sad. +0.01 ruf. -0.57 dom. +0.07 bre. +0.06`	HIS	chainID: 3C, resSeq: 182, molecule: Cytochrome b
8ugr-3C-502	`sad. -0.49 ruf. -0.99 dom. +0.32 bre. +0.15`	HIS	chainID: 3C, resSeq: 97, molecule: Cytochrome b	electron transporter oligomeric count: 162 pocket vol.: 444.0 Å³ d(Fe-oop): 0.047 Å
8ugr-3C-502	`sad. -0.49 ruf. -0.99 dom. +0.32 bre. +0.15`	HIS	chainID: 3C, resSeq: 196, molecule: Cytochrome b
8ugr-3D-501	`sad. -0.07 ruf. -0.66 dom. +0.50 bre. -0.58`	HIS	chainID: 3D, resSeq: 129, molecule: Cytochrome c1	electron transporter oligomeric count: 162 pocket vol.: 508.0 Å³ d(Fe-oop): 0.171 Å
8ugr-3D-501	`sad. -0.07 ruf. -0.66 dom. +0.50 bre. -0.58`	Not assigned.
8ugr-3P-501	`sad. +0.10 ruf. -0.37 dom. -0.39 bre. +0.08`	HIS	chainID: 3P, resSeq: 83, molecule: Cytochrome b	electron transporter oligomeric count: 162 pocket vol.: 393.0 Å³ d(Fe-oop): 0.103 Å
8ugr-3P-501	`sad. +0.10 ruf. -0.37 dom. -0.39 bre. +0.08`	HIS	chainID: 3P, resSeq: 182, molecule: Cytochrome b
8ugr-3P-502	`sad. -0.49 ruf. -1.04 dom. +0.28 bre. +0.15`	HIS	chainID: 3P, resSeq: 97, molecule: Cytochrome b	electron transporter oligomeric count: 162 pocket vol.: 429.0 Å³ d(Fe-oop): 0.059 Å
8ugr-3P-502	`sad. -0.49 ruf. -1.04 dom. +0.28 bre. +0.15`	HIS	chainID: 3P, resSeq: 196, molecule: Cytochrome b
8ugr-3Q-501	`sad. +0.06 ruf. -1.14 dom. +0.27 bre. -0.53`	HIS	chainID: 3Q, resSeq: 41, molecule: Cytochrome c1	electron transporter oligomeric count: 162 pocket vol.: 485.0 Å³ d(Fe-oop): 0.096 Å
8ugr-3Q-501	`sad. +0.06 ruf. -1.14 dom. +0.27 bre. -0.53`	Not assigned.
8ugr-4A-604	`sad. -0.77 ruf. +2.05 dom. +0.62 bre. -0.02`	HIS	chainID: 4A, resSeq: 61, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 162 pocket vol.: 752.0 Å³ d(Fe-oop): 0.037 Å
8ugr-4A-604	`sad. -0.77 ruf. +2.05 dom. +0.62 bre. -0.02`	HIS	chainID: 4A, resSeq: 378, molecule: Cytochrome c oxidase subunit 1
8ugr-4A-605	`sad. -0.61 ruf. +0.94 dom. +0.71 bre. -0.31`	HIS	chainID: 4A, resSeq: 376, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 162 pocket vol.: 675.0 Å³ d(Fe-oop): 0.009 Å
8ugr-4A-605	`sad. -0.61 ruf. +0.94 dom. +0.71 bre. -0.31`	Not assigned.
8ugr-6C-501	`sad. +0.12 ruf. -0.37 dom. -0.04 bre. +0.06`	HIS	chainID: 6C, resSeq: 83, molecule: Cytochrome b	electron transporter oligomeric count: 162 pocket vol.: 408.0 Å³ d(Fe-oop): 0.026 Å
8ugr-6C-501	`sad. +0.12 ruf. -0.37 dom. -0.04 bre. +0.06`	HIS	chainID: 6C, resSeq: 182, molecule: Cytochrome b
8ugr-6C-502	`sad. -0.43 ruf. -1.22 dom. +0.27 bre. +0.16`	HIS	chainID: 6C, resSeq: 97, molecule: Cytochrome b	electron transporter oligomeric count: 162 pocket vol.: 436.0 Å³ d(Fe-oop): 0.043 Å
8ugr-6C-502	`sad. -0.43 ruf. -1.22 dom. +0.27 bre. +0.16`	HIS	chainID: 6C, resSeq: 196, molecule: Cytochrome b
8ugr-6P-501	`sad. +0.09 ruf. -0.65 dom. -0.29 bre. +0.12`	HIS	chainID: 6P, resSeq: 83, molecule: Cytochrome b	electron transporter oligomeric count: 162 pocket vol.: 425.0 Å³ d(Fe-oop): 0.077 Å
8ugr-6P-501	`sad. +0.09 ruf. -0.65 dom. -0.29 bre. +0.12`	HIS	chainID: 6P, resSeq: 182, molecule: Cytochrome b
8ugr-6P-502	`sad. -0.42 ruf. -1.04 dom. +0.18 bre. +0.13`	HIS	chainID: 6P, resSeq: 97, molecule: Cytochrome b	electron transporter oligomeric count: 162 pocket vol.: 401.0 Å³ d(Fe-oop): 0.064 Å
8ugr-6P-502	`sad. -0.42 ruf. -1.04 dom. +0.18 bre. +0.13`	HIS	chainID: 6P, resSeq: 196, molecule: Cytochrome b
8ugr-6Q-501	`sad. +0.01 ruf. -1.60 dom. +0.19 bre. -0.42`	HIS	chainID: 6Q, resSeq: 41, molecule: Cytochrome c1	electron transporter oligomeric count: 162 pocket vol.: 534.0 Å³ d(Fe-oop): 0.071 Å
8ugr-6Q-501	`sad. +0.01 ruf. -1.60 dom. +0.19 bre. -0.42`	MET	chainID: 6Q, resSeq: 160, molecule: Cytochrome c1
8ugr-8A-606	`sad. -0.79 ruf. +1.99 dom. +0.31 bre. -0.10`	HIS	chainID: 8A, resSeq: 61, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 162 pocket vol.: 707.0 Å³ d(Fe-oop): 0.121 Å
8ugr-8A-606	`sad. -0.79 ruf. +1.99 dom. +0.31 bre. -0.10`	HIS	chainID: 8A, resSeq: 378, molecule: Cytochrome c oxidase subunit 1
8ugr-8A-607	`sad. -0.74 ruf. +0.60 dom. +0.77 bre. -0.31`	HIS	chainID: 8A, resSeq: 376, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 162 pocket vol.: 655.0 Å³ d(Fe-oop): 0.003 Å
8ugr-8A-607	`sad. -0.74 ruf. +0.60 dom. +0.77 bre. -0.31`	Not assigned.