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PyDISH No: 18142

PDB: 8ugk,
chainID: 3D, resSeq: 501
heme type: C

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.1 Å

axial ligand #1: HIS

chainID: 3D,
resSeq: 129,
Coordination distance[Å]: 2.219
molecule: Cytochrome c1, heme protein, mitochondrial
Organism: Sus scrofa

axial ligand #2: MET

chainID: 3D,
resSeq: 249,
Coordination distance[Å]: 2.975
molecule: same as ligand #1

List of other hemes in pdb:8ugk

ID of heme Distortion Axial ligands on heme Function & structure
8ugk-3C-501
sad. +0.08
ruf. -0.19
dom. +0.06
bre. +0.02
HIS chainID: 3C,
resSeq: 83,
molecule: Cytochrome b
electron transporter
oligomeric count: 22
pocket vol.: 404.0 Å3
d(Fe-oop): 0.047 Å
HIS chainID: 3C, resSeq: 182,
molecule: Cytochrome b
8ugk-3C-502
sad. -0.62
ruf. -0.56
dom. +0.33
bre. +0.07
HIS chainID: 3C,
resSeq: 97,
molecule: Cytochrome b
electron transporter
oligomeric count: 22
pocket vol.: 401.0 Å3
d(Fe-oop): 0.077 Å
HIS chainID: 3C, resSeq: 196,
molecule: Cytochrome b
8ugk-3P-501
sad. +0.09
ruf. -0.22
dom. -0.23
bre. +0.00
HIS chainID: 3P,
resSeq: 83,
molecule: Cytochrome b
electron transporter
oligomeric count: 22
pocket vol.: 438.0 Å3
d(Fe-oop): 0.066 Å
HIS chainID: 3P, resSeq: 182,
molecule: Cytochrome b
8ugk-3P-502
sad. -0.57
ruf. -0.64
dom. +0.27
bre. +0.09
HIS chainID: 3P,
resSeq: 97,
molecule: Cytochrome b
electron transporter
oligomeric count: 22
pocket vol.: 376.0 Å3
d(Fe-oop): 0.082 Å
HIS chainID: 3P, resSeq: 196,
molecule: Cytochrome b
8ugk-3Q-501
sad. +0.00
ruf. -0.46
dom. +0.41
bre. -0.60
HIS chainID: 3Q,
resSeq: 41,
molecule: Cytochrome c1, heme protein, mitochondrial
electron transporter
oligomeric count: 22
pocket vol.: 443.0 Å3
d(Fe-oop): 0.150 Å
MET chainID: 3Q, resSeq: 160,
molecule: Cytochrome c1, heme protein, mitochondrial