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PyDISH No: 18136

PDB: 8ugj,
chainID: 4A, resSeq: 604
heme type: A

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 2.3 Å

axial ligand #1: HIS

chainID: 4A,
resSeq: 61,
Coordination distance[Å]: 2.828
molecule: Cytochrome c oxidase subunit 1
EC number: 7.1.1.9
Organism: Sus scrofa

axial ligand #2: HIS

chainID: 4A,
resSeq: 378,
Coordination distance[Å]: 2.021
molecule: same as ligand #1

List of other hemes in pdb:8ugj

ID of heme	Distortion	Axial ligands on heme		Function & structure
8ugj-3C-501	`sad. +0.05 ruf. -0.45 dom. +0.02 bre. +0.01`	HIS	chainID: 3C, resSeq: 83, molecule: Cytochrome b	electron transporter oligomeric count: 95 pocket vol.: 435.0 Å³ d(Fe-oop): 0.024 Å
8ugj-3C-501	`sad. +0.05 ruf. -0.45 dom. +0.02 bre. +0.01`	HIS	chainID: 3C, resSeq: 182, molecule: Cytochrome b
8ugj-3C-502	`sad. -0.49 ruf. -0.79 dom. +0.39 bre. +0.09`	HIS	chainID: 3C, resSeq: 97, molecule: Cytochrome b	electron transporter oligomeric count: 95 pocket vol.: 419.0 Å³ d(Fe-oop): 0.013 Å
8ugj-3C-502	`sad. -0.49 ruf. -0.79 dom. +0.39 bre. +0.09`	HIS	chainID: 3C, resSeq: 196, molecule: Cytochrome b
8ugj-3D-501	`sad. +0.00 ruf. -0.69 dom. +0.29 bre. -0.61`	HIS	chainID: 3D, resSeq: 129, molecule: Cytochrome c1	electron transporter oligomeric count: 95 pocket vol.: 476.0 Å³ d(Fe-oop): 0.105 Å
8ugj-3D-501	`sad. +0.00 ruf. -0.69 dom. +0.29 bre. -0.61`	MET	chainID: 3D, resSeq: 249, molecule: Cytochrome c1
8ugj-3P-501	`sad. +0.09 ruf. -0.49 dom. -0.25 bre. +0.03`	HIS	chainID: 3P, resSeq: 83, molecule: Cytochrome b	electron transporter oligomeric count: 95 pocket vol.: 424.0 Å³ d(Fe-oop): 0.063 Å
8ugj-3P-501	`sad. +0.09 ruf. -0.49 dom. -0.25 bre. +0.03`	HIS	chainID: 3P, resSeq: 182, molecule: Cytochrome b
8ugj-3P-502	`sad. -0.49 ruf. -0.80 dom. +0.26 bre. +0.08`	HIS	chainID: 3P, resSeq: 97, molecule: Cytochrome b	electron transporter oligomeric count: 95 pocket vol.: 385.0 Å³ d(Fe-oop): 0.065 Å
8ugj-3P-502	`sad. -0.49 ruf. -0.80 dom. +0.26 bre. +0.08`	HIS	chainID: 3P, resSeq: 196, molecule: Cytochrome b
8ugj-3Q-501	`sad. +0.02 ruf. -0.63 dom. +0.29 bre. -0.62`	HIS	chainID: 3Q, resSeq: 41, molecule: Cytochrome c1	electron transporter oligomeric count: 95 pocket vol.: 477.0 Å³ d(Fe-oop): 0.104 Å
8ugj-3Q-501	`sad. +0.02 ruf. -0.63 dom. +0.29 bre. -0.62`	MET	chainID: 3Q, resSeq: 160, molecule: Cytochrome c1
8ugj-4A-605	`sad. -0.59 ruf. +0.43 dom. +0.72 bre. -0.44`	HIS	chainID: 4A, resSeq: 376, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 95 pocket vol.: 689.0 Å³ d(Fe-oop): 0.010 Å
8ugj-4A-605	`sad. -0.59 ruf. +0.43 dom. +0.72 bre. -0.44`	Not assigned.
8ugj-8A-604	`sad. -0.70 ruf. -0.01 dom. +0.62 bre. -0.46`	HIS	chainID: 8A, resSeq: 61, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 95 pocket vol.: 639.0 Å³ d(Fe-oop): 0.038 Å
8ugj-8A-604	`sad. -0.70 ruf. -0.01 dom. +0.62 bre. -0.46`	HIS	chainID: 8A, resSeq: 378, molecule: Cytochrome c oxidase subunit 1
8ugj-8A-605	`sad. -0.61 ruf. +0.61 dom. +0.72 bre. -0.42`	HIS	chainID: 8A, resSeq: 376, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 95 pocket vol.: 697.0 Å³ d(Fe-oop): 0.007 Å
8ugj-8A-605	`sad. -0.61 ruf. +0.61 dom. +0.72 bre. -0.42`	Not assigned.