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PyDISH No: 18091

PDB: 8ugd,
chainID: 3C, resSeq: 502
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 3.5 Å

axial ligand #1: HIS

chainID: 3C,
resSeq: 97,
Coordination distance[Å]: 2.797
molecule: Cytochrome b
Organism: Sus scrofa

axial ligand #2: HIS

chainID: 3C,
resSeq: 196,
Coordination distance[Å]: 2.155
molecule: same as ligand #1

List of other hemes in pdb:8ugd

ID of heme Distortion Axial ligands on heme Function & structure
8ugd-3C-501
sad. +0.07
ruf. -0.44
dom. +0.03
bre. +0.05
HIS chainID: 3C,
resSeq: 83,
molecule: Cytochrome b
electron transporter
oligomeric count: 22
pocket vol.: 436.0 Å3
d(Fe-oop): 0.031 Å
HIS chainID: 3C, resSeq: 182,
molecule: Cytochrome b
8ugd-3D-501
sad. -0.02
ruf. -1.27
dom. +0.09
bre. -0.50
HIS chainID: 3D,
resSeq: 129,
molecule: Cytochrome c1
electron transporter
oligomeric count: 22
pocket vol.: 449.0 Å3
d(Fe-oop): 0.032 Å
MET chainID: 3D, resSeq: 249,
molecule: Cytochrome c1
8ugd-3P-501
sad. -0.07
ruf. -0.62
dom. +0.07
bre. +0.07
HIS chainID: 3P,
resSeq: 83,
molecule: Cytochrome b
electron transporter
oligomeric count: 22
pocket vol.: 471.0 Å3
d(Fe-oop): 0.011 Å
HIS chainID: 3P, resSeq: 182,
molecule: Cytochrome b
8ugd-3P-502
sad. -0.48
ruf. -0.80
dom. +0.46
bre. +0.14
HIS chainID: 3P,
resSeq: 97,
molecule: Cytochrome b
electron transporter
oligomeric count: 22
pocket vol.: 429.0 Å3
d(Fe-oop): 0.004 Å
HIS chainID: 3P, resSeq: 196,
molecule: Cytochrome b
8ugd-3Q-501
sad. +0.01
ruf. -0.15
dom. +0.04
bre. -0.63
HIS chainID: 3Q,
resSeq: 41,
molecule: Cytochrome c1
electron transporter
oligomeric count: 22
pocket vol.: 420.0 Å3
d(Fe-oop): 0.011 Å
Not assigned.