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PyDISH No: 17988

PDB: 8stw,
chainID: A, resSeq: 502
heme type: B

distortion

Protein data

function: lyase
experiment: X-RAY DIFFRACTION
resolution: 2.4 Å

axial ligand #1: CYS

chainID: A,
resSeq: 52,
Coordination distance[Å]: 2.329
molecule: Cystathionine beta-synthase, K384N variant
EC number: 4.2.1.22
Organism: Homo sapiens

axial ligand #2: HIS

chainID: A,
resSeq: 65,
Coordination distance[Å]: 2.04
molecule: same as ligand #1

List of other hemes in pdb:8stw

ID of heme Distortion Axial ligands on heme Function & structure
8stw-B-502
 sad. -0.34
ruf. -0.78
dom. -0.09
bre. +0.09
 CYS chainID: B,
resSeq: 52,
molecule: Cystathionine beta-synthase, K384N variant		 lyase
oligomeric count: 6
pocket vol.: 485.0 Å3
d(Fe-oop): 0.091 Å
HIS chainID: B, resSeq: 65,
molecule: Cystathionine beta-synthase, K384N variant
8stw-C-502
 sad. -0.37
ruf. -0.87
dom. -0.24
bre. +0.17
 CYS chainID: C,
resSeq: 52,
molecule: Cystathionine beta-synthase, K384N variant		 lyase
oligomeric count: 6
pocket vol.: 458.0 Å3
d(Fe-oop): 0.126 Å
HIS chainID: C, resSeq: 65,
molecule: Cystathionine beta-synthase, K384N variant
8stw-D-502
 sad. -0.41
ruf. -1.12
dom. +0.03
bre. +0.16
 CYS chainID: D,
resSeq: 52,
molecule: Cystathionine beta-synthase, K384N variant		 lyase
oligomeric count: 6
pocket vol.: 487.0 Å3
d(Fe-oop): 0.148 Å
HIS chainID: D, resSeq: 65,
molecule: Cystathionine beta-synthase, K384N variant
8stw-E-502
 sad. -0.39
ruf. +0.91
dom. +0.30
bre. +0.08
 CYS chainID: E,
resSeq: 52,
molecule: Cystathionine beta-synthase, K384N variant		 lyase
oligomeric count: 6
pocket vol.: 509.0 Å3
d(Fe-oop): 0.012 Å
HIS chainID: E, resSeq: 65,
molecule: Cystathionine beta-synthase, K384N variant
8stw-F-502
 sad. -0.27
ruf. -0.51
dom. -0.17
bre. -0.03
 CYS chainID: F,
resSeq: 52,
molecule: Cystathionine beta-synthase, K384N variant		 lyase
oligomeric count: 6
pocket vol.: 465.0 Å3
d(Fe-oop): 0.101 Å
HIS chainID: F, resSeq: 65,
molecule: Cystathionine beta-synthase, K384N variant