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PyDISH No: 17963

PDB: 8snh,
chainID: I, resSeq: 502
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.7 Å

axial ligand #1: HIS

chainID: I,
resSeq: 101,
Coordination distance[Å]: 1.966
molecule: Cytochrome b
Organism: Pseudomonas aeruginosa

axial ligand #2: HIS

chainID: I,
resSeq: 203,
Coordination distance[Å]: 2.551
molecule: same as ligand #1

List of other hemes in pdb:8snh

ID of heme Distortion Axial ligands on heme Function & structure
8snh-E-504
 sad. +0.21
ruf. -0.11
dom. +0.14
bre. -0.20
 HIS chainID: E,
resSeq: 61,
molecule: cytochrome-c oxidase		 translocase
oligomeric count: 13
pocket vol.: 396.0 Å3
d(Fe-oop): 0.135 Å
HIS chainID: E, resSeq: 348,
molecule: cytochrome-c oxidase
8snh-E-505
 sad. +1.34
ruf. +0.34
dom. +0.48
bre. +0.01
 HIS chainID: E,
resSeq: 346,
molecule: cytochrome-c oxidase		 translocase
oligomeric count: 13
pocket vol.: 423.0 Å3
d(Fe-oop): 0.007 Å
Not assigned.
8snh-I-503
 sad. -0.01
ruf. -0.02
dom. +0.16
bre. -0.20
 HIS chainID: I,
resSeq: 87,
molecule: Cytochrome b		 electron transporter
oligomeric count: 13
pocket vol.: 363.0 Å3
d(Fe-oop): 0.207 Å
HIS chainID: I, resSeq: 188,
molecule: Cytochrome b
8snh-J-500
 sad. +0.13
ruf. -0.07
dom. +0.03
bre. -0.27
 HIS chainID: J,
resSeq: 55,
molecule: Cytochrome c1		 electron transporter
oligomeric count: 13
pocket vol.: 316.0 Å3
d(Fe-oop): 0.015 Å
MET chainID: J, resSeq: 150,
molecule: Cytochrome c1
8snh-K-501
 sad. +0.29
ruf. -0.04
dom. +0.15
bre. -0.25
 HIS chainID: K,
resSeq: 134,
molecule: Cytochrome c4		 electron transporter
oligomeric count: 13
pocket vol.: 302.0 Å3
d(Fe-oop): 0.172 Å
MET chainID: K, resSeq: 178,
molecule: Cytochrome c4
8snh-K-502
 sad. +0.22
ruf. -0.03
dom. +0.01
bre. -0.24
 HIS chainID: K,
resSeq: 38,
molecule: Cytochrome c4		 electron transporter
oligomeric count: 13
pocket vol.: 326.0 Å3
d(Fe-oop): 0.228 Å
MET chainID: K, resSeq: 77,
molecule: Cytochrome c4
8snh-D-501
 sad. -0.53
ruf. -0.59
dom. +0.36
bre. -0.13
 HIS chainID: D,
resSeq: 101,
molecule: Cytochrome b		 electron transporter
oligomeric count: 13
pocket vol.: 372.0 Å3
d(Fe-oop): 0.126 Å
HIS chainID: D, resSeq: 203,
molecule: Cytochrome b
8snh-D-502
 sad. +0.00
ruf. +0.17
dom. +0.22
bre. -0.20
 HIS chainID: D,
resSeq: 87,
molecule: Cytochrome b		 electron transporter
oligomeric count: 13
pocket vol.: 370.0 Å3
d(Fe-oop): 0.217 Å
HIS chainID: D, resSeq: 188,
molecule: Cytochrome b
8snh-M-500
 sad. +0.15
ruf. -0.11
dom. +0.09
bre. -0.26
 HIS chainID: M,
resSeq: 55,
molecule: Cytochrome c1		 electron transporter
oligomeric count: 13
pocket vol.: 312.0 Å3
d(Fe-oop): 0.019 Å
MET chainID: M, resSeq: 150,
molecule: Cytochrome c1
8snh-N-501
 sad. +0.20
ruf. -0.19
dom. +0.30
bre. -0.25
 HIS chainID: N,
resSeq: 134,
molecule: Cytochrome c4		 electron transporter
oligomeric count: 13
pocket vol.: 317.0 Å3
d(Fe-oop): 0.211 Å
MET chainID: N, resSeq: 178,
molecule: Cytochrome c4
8snh-N-502
 sad. +0.34
ruf. +0.11
dom. -0.02
bre. -0.24
 HIS chainID: N,
resSeq: 38,
molecule: Cytochrome c4		 electron transporter
oligomeric count: 13
pocket vol.: 324.0 Å3
d(Fe-oop): 0.070 Å
MET chainID: N, resSeq: 77,
molecule: Cytochrome c4
8snh-F-301
 sad. +0.55
ruf. -0.15
dom. +0.09
bre. -0.26
 HIS chainID: F,
resSeq: 69,
molecule: Cbb3-type Cytochrome C oxidase subunit II		 electron transporter
oligomeric count: 13
pocket vol.: 324.0 Å3
d(Fe-oop): 0.059 Å
MET chainID: F, resSeq: 137,
molecule: Cbb3-type Cytochrome C oxidase subunit II
8snh-G-401
 sad. +0.04
ruf. -0.22
dom. +0.17
bre. -0.21
 HIS chainID: G,
resSeq: 147,
molecule: Cbb3-type cytochrome c oxidase subunit		 electron transporter
oligomeric count: 13
pocket vol.: 341.0 Å3
d(Fe-oop): 0.008 Å
MET chainID: G, resSeq: 279,
molecule: Cbb3-type cytochrome c oxidase subunit
8snh-G-402
 sad. +0.25
ruf. -0.27
dom. -0.04
bre. -0.17
 HIS chainID: G,
resSeq: 237,
molecule: Cbb3-type cytochrome c oxidase subunit		 electron transporter
oligomeric count: 13
pocket vol.: 325.0 Å3
d(Fe-oop): 0.017 Å
Not assigned.