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PyDISH No: 17926

PDB: 8s5l,
chainID: D, resSeq: 601
heme type: B

distortion

Protein data

function: lyase
experiment: ELECTRON MICROSCOPY
resolution: 3.8 Å

axial ligand #1: CYS

chainID: D,
resSeq: 52,
Coordination distance[Å]: 2.957
molecule: Cystathionine beta-synthase
EC number: 4.2.1.22
Organism: Homo sapiens

axial ligand #2: HIS

chainID: D,
resSeq: 65,
Coordination distance[Å]: 2.049
molecule: same as ligand #1

List of other hemes in pdb:8s5l

ID of heme Distortion Axial ligands on heme Function & structure
8s5l-A-601
sad. -0.86
ruf. -0.78
dom. -0.02
bre. +0.14
CYS chainID: A,
resSeq: 52,
molecule: Cystathionine beta-synthase
lyase
oligomeric count: 4
pocket vol.: 526.0 Å3
d(Fe-oop): 0.019 Å
HIS chainID: A, resSeq: 65,
molecule: Cystathionine beta-synthase
8s5l-B-601
sad. -0.58
ruf. -0.84
dom. -0.30
bre. +0.06
HIS chainID: B,
resSeq: 65,
molecule: Cystathionine beta-synthase
lyase
oligomeric count: 4
pocket vol.: 526.0 Å3
d(Fe-oop): 0.002 Å
Not assigned.
8s5l-C-601
sad. -0.59
ruf. -0.63
dom. -0.27
bre. +0.03
HIS chainID: C,
resSeq: 65,
molecule: Cystathionine beta-synthase
lyase
oligomeric count: 4
pocket vol.: 522.0 Å3
d(Fe-oop): 0.038 Å
Not assigned.