Browser

select function

select ligand

clear

→ advanced search

PyDISH No: 17848

PDB: 8rv0,
chainID: Y, resSeq: 606
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.55 Å

axial ligand #1: HIS

chainID: Y,
resSeq: 145,
Coordination distance[Å]: 1.932
molecule: Octaheme cytochrome c nitrite reductase
Organism: Trichlorobacter ammonificans

axial ligand #2: HIS

chainID: Y,
resSeq: 309,
Coordination distance[Å]: 1.932
molecule: same as ligand #1

List of other hemes in pdb:8rv0

ID of heme	Distortion	Axial ligands on heme		Function & structure
8rv0-Y-601	`sad. -0.05 ruf. -0.72 dom. -0.09 bre. -0.11`	HIS	chainID: Y, resSeq: 46, molecule: Octaheme cytochrome c nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 533.0 Å³ d(Fe-oop): 0.004 Å
8rv0-Y-601	`sad. -0.05 ruf. -0.72 dom. -0.09 bre. -0.11`	HIS	chainID: Y, resSeq: 73, molecule: Octaheme cytochrome c nitrite reductase
8rv0-Y-602	`sad. -0.08 ruf. -0.40 dom. -0.03 bre. -0.01`	HIS	chainID: Y, resSeq: 67, molecule: Octaheme cytochrome c nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 389.0 Å³ d(Fe-oop): 0.022 Å
8rv0-Y-602	`sad. -0.08 ruf. -0.40 dom. -0.03 bre. -0.01`	HIS	chainID: Y, resSeq: 250, molecule: Octaheme cytochrome c nitrite reductase
8rv0-Y-603	`sad. +0.43 ruf. -0.40 dom. -0.10 bre. -0.39`	HIS	chainID: Y, resSeq: 58, molecule: Octaheme cytochrome c nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 550.0 Å³ d(Fe-oop): 0.015 Å
8rv0-Y-603	`sad. +0.43 ruf. -0.40 dom. -0.10 bre. -0.39`	HIS	chainID: Y, resSeq: 95, molecule: Octaheme cytochrome c nitrite reductase
8rv0-Y-604	`sad. +0.46 ruf. -0.62 dom. +0.02 bre. -0.30`	NO	chainID: Y, resSeq: 609, molecule: NITRIC OXIDE	oxidoreductase oligomeric count: 3 pocket vol.: 403.0 Å³ d(Fe-oop): 0.089 Å
8rv0-Y-604	`sad. +0.46 ruf. -0.62 dom. +0.02 bre. -0.30`	NO2	chainID: Y, resSeq: 610, molecule: NITRITE ION
8rv0-Y-605	`sad. +0.82 ruf. -0.76 dom. -0.09 bre. -0.19`	HIS	chainID: Y, resSeq: 247, molecule: Octaheme cytochrome c nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 474.0 Å³ d(Fe-oop): 0.036 Å
8rv0-Y-605	`sad. +0.82 ruf. -0.76 dom. -0.09 bre. -0.19`	HIS	chainID: Y, resSeq: 407, molecule: Octaheme cytochrome c nitrite reductase
8rv0-Y-607	`sad. +0.97 ruf. -0.98 dom. -0.12 bre. -0.01`	HIS	chainID: Y, resSeq: 392, molecule: Octaheme cytochrome c nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 396.0 Å³ d(Fe-oop): 0.099 Å
8rv0-Y-607	`sad. +0.97 ruf. -0.98 dom. -0.12 bre. -0.01`	HIS	chainID: Y, resSeq: 500, molecule: Octaheme cytochrome c nitrite reductase
8rv0-Y-608	`sad. -0.16 ruf. -1.65 dom. +0.05 bre. -0.03`	HIS	chainID: Y, resSeq: 381, molecule: Octaheme cytochrome c nitrite reductase	oxidoreductase oligomeric count: 3 pocket vol.: 532.0 Å³ d(Fe-oop): 0.012 Å
8rv0-Y-608	`sad. -0.16 ruf. -1.65 dom. +0.05 bre. -0.03`	HIS	chainID: Y, resSeq: 424, molecule: Octaheme cytochrome c nitrite reductase