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PyDISH No: 17827

PDB: 8wdv,
chainID: C, resSeq: 402
heme type: C

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.24 Å

axial ligand #1: MET

chainID: C,
resSeq: 130,
Coordination distance[Å]: 2.499
molecule: Photosynthetic reaction center cytochrome c subunit
Organism: Allochromatium vinosum DSM 180

axial ligand #2: HIS

chainID: C,
resSeq: 156,
Coordination distance[Å]: 2.135
molecule: same as ligand #1

List of other hemes in pdb:8wdv

ID of heme Distortion Axial ligands on heme Function & structure
8wdv-C-401
sad. +0.16
ruf. -0.08
dom. -0.03
bre. +0.03
MET chainID: C,
resSeq: 94,
molecule: Photosynthetic reaction center cytochrome c subunit
electron transporter
oligomeric count: 36
pocket vol.: 352.0 Å3
d(Fe-oop): 0.001 Å
HIS chainID: C, resSeq: 111,
molecule: Photosynthetic reaction center cytochrome c subunit
8wdv-C-403
sad. +0.10
ruf. -0.51
dom. +0.02
bre. +0.04
MET chainID: C,
resSeq: 236,
molecule: Photosynthetic reaction center cytochrome c subunit
electron transporter
oligomeric count: 36
pocket vol.: 304.0 Å3
d(Fe-oop): 0.008 Å
HIS chainID: C, resSeq: 251,
molecule: Photosynthetic reaction center cytochrome c subunit
8wdv-C-404
sad. -0.16
ruf. +0.18
dom. +0.18
bre. +0.03
HIS chainID: C,
resSeq: 144,
molecule: Photosynthetic reaction center cytochrome c subunit
electron transporter
oligomeric count: 36
pocket vol.: 316.0 Å3
d(Fe-oop): 0.004 Å
HIS chainID: C, resSeq: 311,
molecule: Photosynthetic reaction center cytochrome c subunit