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PyDISH No: 17765

PDB: 8rvm,
chainID: YYY, resSeq: 607
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 1.6 Å

axial ligand #1: HIS

chainID: YYY,
resSeq: 392,
Coordination distance[Å]: 1.951
molecule: Octaheme nitrite c cytochrome c reductase
Organism: Trichlorobacter ammonificans

axial ligand #2: HIS

chainID: YYY,
resSeq: 500,
Coordination distance[Å]: 1.926
molecule: same as ligand #1

List of other hemes in pdb:8rvm

ID of heme Distortion Axial ligands on heme Function & structure
8rvm-YYY-601
 sad. -0.01
ruf. -0.92
dom. -0.04
bre. -0.23
 HIS chainID: YYY,
resSeq: 46,
molecule: Octaheme nitrite c cytochrome c reductase		 electron transporter
oligomeric count: 3
pocket vol.: 549.0 Å3
d(Fe-oop): 0.006 Å
HIS chainID: YYY, resSeq: 73,
molecule: Octaheme nitrite c cytochrome c reductase
8rvm-YYY-602
 sad. -0.03
ruf. -0.48
dom. -0.03
bre. -0.25
 HIS chainID: YYY,
resSeq: 67,
molecule: Octaheme nitrite c cytochrome c reductase		 electron transporter
oligomeric count: 3
pocket vol.: 368.0 Å3
d(Fe-oop): 0.004 Å
HIS chainID: YYY, resSeq: 250,
molecule: Octaheme nitrite c cytochrome c reductase
8rvm-YYY-603
 sad. +0.23
ruf. -0.52
dom. -0.18
bre. -0.38
 HIS chainID: YYY,
resSeq: 58,
molecule: Octaheme nitrite c cytochrome c reductase		 electron transporter
oligomeric count: 3
pocket vol.: 559.0 Å3
d(Fe-oop): 0.047 Å
HIS chainID: YYY, resSeq: 95,
molecule: Octaheme nitrite c cytochrome c reductase
8rvm-YYY-604
 sad. +0.35
ruf. -0.57
dom. +0.05
bre. -0.28
 LYS chainID: YYY,
resSeq: 206,
molecule: Octaheme nitrite c cytochrome c reductase		 electron transporter
oligomeric count: 3
pocket vol.: 395.0 Å3
d(Fe-oop): 0.062 Å
PO4 chainID: YYY, resSeq: 609,
molecule: PHOSPHATE ION
8rvm-YYY-605
 sad. +0.62
ruf. -0.85
dom. -0.11
bre. -0.25
 HIS chainID: YYY,
resSeq: 247,
molecule: Octaheme nitrite c cytochrome c reductase		 electron transporter
oligomeric count: 3
pocket vol.: 477.0 Å3
d(Fe-oop): 0.020 Å
HIS chainID: YYY, resSeq: 407,
molecule: Octaheme nitrite c cytochrome c reductase
8rvm-YYY-606
 sad. -0.27
ruf. -1.01
dom. +0.13
bre. -0.14
 HIS chainID: YYY,
resSeq: 145,
molecule: Octaheme nitrite c cytochrome c reductase		 electron transporter
oligomeric count: 3
pocket vol.: 399.0 Å3
d(Fe-oop): 0.009 Å
HIS chainID: YYY, resSeq: 309,
molecule: Octaheme nitrite c cytochrome c reductase
8rvm-YYY-608
 sad. -0.15
ruf. -1.70
dom. +0.11
bre. -0.07
 HIS chainID: YYY,
resSeq: 381,
molecule: Octaheme nitrite c cytochrome c reductase		 electron transporter
oligomeric count: 3
pocket vol.: 536.0 Å3
d(Fe-oop): 0.028 Å
HIS chainID: YYY, resSeq: 424,
molecule: Octaheme nitrite c cytochrome c reductase