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PyDISH No: 17559

PDB: 8k9f,
chainID: A, resSeq: 302
heme type: C

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.9 Å

axial ligand #1: HIS

chainID: A,
resSeq: 133,
Coordination distance[Å]: 2.08
molecule: Cytochrome c7-like domain-containing protein
Organism: Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)

axial ligand #2: HIS

chainID: A,
resSeq: 168,
Coordination distance[Å]: 2.27
molecule: same as ligand #1

List of other hemes in pdb:8k9f

ID of heme Distortion Axial ligands on heme Function & structure
8k9f-A-301
sad. +0.30
ruf. -1.09
dom. +0.21
bre. +0.52
MET chainID: A,
resSeq: 161,
molecule: Cytochrome c7-like domain-containing protein
electron transporter
oligomeric count: 8
pocket vol.: 302.0 Å3
d(Fe-oop): 0.026 Å
HIS chainID: A, resSeq: 218,
molecule: Cytochrome c7-like domain-containing protein
8k9f-A-303
sad. -0.27
ruf. +0.12
dom. +0.33
bre. +0.36
HIS chainID: A,
resSeq: 130,
molecule: Cytochrome c7-like domain-containing protein
electron transporter
oligomeric count: 8
pocket vol.: 389.0 Å3
d(Fe-oop): 0.207 Å
HIS chainID: A, resSeq: 144,
molecule: Cytochrome c7-like domain-containing protein
8k9f-A-304
sad. -0.43
ruf. +0.66
dom. +0.09
bre. +0.37
HIS chainID: A,
resSeq: 55,
molecule: Cytochrome c7-like domain-containing protein
electron transporter
oligomeric count: 8
pocket vol.: 439.0 Å3
d(Fe-oop): 0.013 Å
HIS chainID: A, resSeq: 70,
molecule: Cytochrome c7-like domain-containing protein
8k9f-A-305
sad. +0.39
ruf. -0.67
dom. -0.47
bre. +0.60
HIS chainID: A,
resSeq: 58,
molecule: Cytochrome c7-like domain-containing protein
electron transporter
oligomeric count: 8
pocket vol.: 376.0 Å3
d(Fe-oop): 0.197 Å
HIS chainID: A, resSeq: 91,
molecule: Cytochrome c7-like domain-containing protein
8k9f-E-301
sad. +0.04
ruf. +0.25
dom. +0.19
bre. +0.28
HIS chainID: E,
resSeq: 107,
molecule: Cytochrome c domain-containing protein
electron transporter
oligomeric count: 8
pocket vol.: 365.0 Å3
d(Fe-oop): 0.169 Å
MET chainID: E, resSeq: 162,
molecule: Cytochrome c domain-containing protein