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PyDISH No: 17308

PDB: 8ib4,
chainID: AD, resSeq: 401
heme type: C

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 4.3 Å

axial ligand #1: HIS

chainID: AD,
resSeq: 125,
Coordination distance[Å]: 2.089
molecule: Cytochrome c1, heme protein, mitochondrial
EC number: 7.1.1.8
Organism: Mus musculus

axial ligand #2: MET

chainID: AD,
resSeq: 244,
Coordination distance[Å]: 2.037
molecule: same as ligand #1

List of other hemes in pdb:8ib4

ID of heme Distortion Axial ligands on heme Function & structure
8ib4-AC-401
 sad. -0.04
ruf. +0.04
dom. -0.08
bre. +0.03
 HIS chainID: AC,
resSeq: 83,
molecule: Cytochrome b		 electron transporter
oligomeric count: 66
pocket vol.: 446.0 Å3
d(Fe-oop): 0.042 Å
HIS chainID: AC, resSeq: 182,
molecule: Cytochrome b
8ib4-AC-402
 sad. -0.16
ruf. -0.16
dom. +0.09
bre. +0.13
 HIS chainID: AC,
resSeq: 97,
molecule: Cytochrome b		 electron transporter
oligomeric count: 66
pocket vol.: 434.0 Å3
d(Fe-oop): 0.052 Å
HIS chainID: AC, resSeq: 196,
molecule: Cytochrome b
8ib4-Ac-402
 sad. -0.18
ruf. +0.08
dom. +0.22
bre. +0.01
 HIS chainID: Ac,
resSeq: 83,
molecule: Cytochrome b		 electron transporter
oligomeric count: 66
pocket vol.: 450.0 Å3
d(Fe-oop): 0.014 Å
HIS chainID: Ac, resSeq: 182,
molecule: Cytochrome b
8ib4-Ac-403
 sad. -0.31
ruf. -0.06
dom. -0.03
bre. +0.08
 HIS chainID: Ac,
resSeq: 97,
molecule: Cytochrome b		 electron transporter
oligomeric count: 66
pocket vol.: 415.0 Å3
d(Fe-oop): 0.117 Å
HIS chainID: Ac, resSeq: 196,
molecule: Cytochrome b
8ib4-Ad-401
 sad. +0.02
ruf. -0.05
dom. +0.11
bre. -0.61
 HIS chainID: Ad,
resSeq: 125,
molecule: Cytochrome c1, heme protein, mitochondrial		 translocase
oligomeric count: 66
pocket vol.: 374.0 Å3
d(Fe-oop): 0.026 Å
MET chainID: Ad, resSeq: 244,
molecule: Cytochrome c1, heme protein, mitochondrial