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PyDISH No: 17224

PDB: 8hcr,
chainID: B, resSeq: 602
heme type: B

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY

axial ligand #1: HIS

chainID: B,
resSeq: 114,
Coordination distance[Å]: 2.38
molecule: Cytochrome bc1 complex cytochrome b subunit
EC number: 7.1.1.8
Organism: Mycobacterium tuberculosis variant bovis BCG

axial ligand #2: HIS

chainID: B,
resSeq: 216,
Coordination distance[Å]: 2.281
molecule: same as ligand #1

List of other hemes in pdb:8hcr

ID of heme Distortion Axial ligands on heme Function & structure
8hcr-B-601
sad. -0.90
ruf. -0.10
dom. +0.59
bre. -0.04
HIS chainID: B,
resSeq: 128,
molecule: Cytochrome bc1 complex cytochrome b subunit
translocase
oligomeric count: 18
pocket vol.: 456.0 Å3
d(Fe-oop): 0.111 Å
HIS chainID: B, resSeq: 231,
molecule: Cytochrome bc1 complex cytochrome b subunit
8hcr-C-301
sad. -0.43
ruf. +0.15
dom. -0.36
bre. -0.07
Not assigned. unclassified
oligomeric count: 18
pocket vol.: 649.0 Å3
d(Fe-oop): 0.034 Å
Not assigned.
8hcr-C-302
sad. +0.28
ruf. -0.71
dom. +0.08
bre. -0.06
HIS chainID: C,
resSeq: 178,
molecule: Cytochrome bc1 complex cytochrome c subunit
translocase
oligomeric count: 18
pocket vol.: 481.0 Å3
d(Fe-oop): 0.155 Å
MET chainID: C, resSeq: 215,
molecule: Cytochrome bc1 complex cytochrome c subunit
8hcr-F-601
sad. -0.00
ruf. -0.30
dom. +0.35
bre. -0.55
HIS chainID: F,
resSeq: 397,
molecule: Probable cytochrome c oxidase subunit 1
translocase
oligomeric count: 18
pocket vol.: 909.0 Å3
d(Fe-oop): 0.145 Å
Not assigned.
8hcr-F-602
sad. -0.05
ruf. +0.72
dom. +0.30
bre. -0.52
HIS chainID: F,
resSeq: 86,
molecule: Probable cytochrome c oxidase subunit 1
translocase
oligomeric count: 18
pocket vol.: 846.0 Å3
d(Fe-oop): 0.125 Å
HIS chainID: F, resSeq: 399,
molecule: Probable cytochrome c oxidase subunit 1
8hcr-N-601
sad. -0.93
ruf. -0.17
dom. +0.50
bre. -0.04
HIS chainID: N,
resSeq: 128,
molecule: Cytochrome bc1 complex cytochrome b subunit
translocase
oligomeric count: 18
pocket vol.: 451.0 Å3
d(Fe-oop): 0.056 Å
HIS chainID: N, resSeq: 231,
molecule: Cytochrome bc1 complex cytochrome b subunit
8hcr-N-602
sad. -0.55
ruf. -0.24
dom. +0.36
bre. -0.11
HIS chainID: N,
resSeq: 114,
molecule: Cytochrome bc1 complex cytochrome b subunit
translocase
oligomeric count: 18
pocket vol.: 461.0 Å3
d(Fe-oop): 0.066 Å
HIS chainID: N, resSeq: 216,
molecule: Cytochrome bc1 complex cytochrome b subunit
8hcr-O-301
sad. +0.05
ruf. -0.85
dom. +0.01
bre. +0.05
HIS chainID: O,
resSeq: 77,
molecule: Cytochrome bc1 complex cytochrome c subunit
translocase
oligomeric count: 18
pocket vol.: 652.0 Å3
d(Fe-oop): 0.084 Å
Not assigned.
8hcr-O-302
sad. +0.10
ruf. +1.24
dom. +0.32
bre. -0.55
HIS chainID: O,
resSeq: 178,
molecule: Cytochrome bc1 complex cytochrome c subunit
translocase
oligomeric count: 18
pocket vol.: 443.0 Å3
d(Fe-oop): 0.115 Å
MET chainID: O, resSeq: 215,
molecule: Cytochrome bc1 complex cytochrome c subunit
8hcr-R-601
sad. -0.01
ruf. -0.15
dom. +0.32
bre. -0.55
HIS chainID: R,
resSeq: 397,
molecule: Probable cytochrome c oxidase subunit 1
translocase
oligomeric count: 18
pocket vol.: 939.0 Å3
d(Fe-oop): 0.134 Å
Not assigned.
8hcr-R-602
sad. -0.02
ruf. +0.29
dom. +0.36
bre. -0.54
HIS chainID: R,
resSeq: 86,
molecule: Probable cytochrome c oxidase subunit 1
translocase
oligomeric count: 18
pocket vol.: 833.0 Å3
d(Fe-oop): 0.146 Å
HIS chainID: R, resSeq: 399,
molecule: Probable cytochrome c oxidase subunit 1