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Protein data
function: electron transporterexperiment: ELECTRON MICROSCOPY
resolution: 2.96 Å
axial ligand #1: CYS
chainID: Y5,resSeq: 42,
Coordination distance[Å]: 3.023
molecule: Ymf75
Organism: Tetrahymena thermophila SB210
List of other hemes in pdb:8gym
| ID of heme | Distortion | Axial ligands on heme | Function & structure | |
|---|---|---|---|---|
8gym-2e-401 |
sad. +0.01 ruf. +0.30 dom. -0.02 bre. -0.07 |
HIS | chainID: 2e, resSeq: 260, molecule: NmrA domain-containing protein |
electron transporter oligomeric count: 326 pocket vol.: 582.0 Å3 d(Fe-oop): 0.022 Å |
| HIS | chainID: 2e, resSeq: 317, molecule: NmrA domain-containing protein |
|||
8gym-c1-702 |
sad. +0.03 ruf. +0.32 dom. -0.06 bre. -0.43 |
HIS | chainID: c1, resSeq: 101, molecule: Cytochrome c oxidase subunit 1 |
translocase oligomeric count: 326 pocket vol.: 553.0 Å3 d(Fe-oop): 0.011 Å |
| HIS | chainID: c1, resSeq: 528, molecule: Cytochrome c oxidase subunit 1 |
|||
8gym-c1-708 |
sad. +0.02 ruf. -0.03 dom. +0.02 bre. -0.44 |
HIS | chainID: c1, resSeq: 526, molecule: Cytochrome c oxidase subunit 1 |
translocase oligomeric count: 326 pocket vol.: 677.0 Å3 d(Fe-oop): 0.017 Å |
| Not assigned. | ||||
8gym-y5-203 |
sad. -0.00 ruf. -0.41 dom. -0.01 bre. +0.00 |
CYS | chainID: y5, resSeq: 42, molecule: Ymf75 |
electron transporter oligomeric count: 326 pocket vol.: 768.0 Å3 d(Fe-oop): 0.002 Å |
| Not assigned. | ||||
8gym-qC-501 |
sad. +0.04 ruf. +0.64 dom. +0.06 bre. +0.03 |
HIS | chainID: qC, resSeq: 84, molecule: Apocytochrome b |
oxidoreductase oligomeric count: 326 pocket vol.: 390.0 Å3 d(Fe-oop): 0.024 Å |
| HIS | chainID: qC, resSeq: 185, molecule: Apocytochrome b |
|||
8gym-qC-502 |
sad. -0.11 ruf. -0.79 dom. +0.10 bre. +0.05 |
HIS | chainID: qC, resSeq: 98, molecule: Apocytochrome b |
oxidoreductase oligomeric count: 326 pocket vol.: 380.0 Å3 d(Fe-oop): 0.034 Å |
| HIS | chainID: qC, resSeq: 199, molecule: Apocytochrome b |
|||
8gym-qD-401 |
sad. +0.01 ruf. -0.11 dom. -0.05 bre. -0.07 |
HIS | chainID: qD, resSeq: 85, molecule: Cytochrome protein c1 |
electron transporter oligomeric count: 326 pocket vol.: 377.0 Å3 d(Fe-oop): 0.021 Å |
| MET | chainID: qD, resSeq: 209, molecule: Cytochrome protein c1 |
|||
8gym-qc-502 |
sad. +0.03 ruf. +0.66 dom. +0.05 bre. +0.03 |
HIS | chainID: qc, resSeq: 84, molecule: Apocytochrome b |
oxidoreductase oligomeric count: 326 pocket vol.: 346.0 Å3 d(Fe-oop): 0.019 Å |
| HIS | chainID: qc, resSeq: 185, molecule: Apocytochrome b |
|||
8gym-qc-503 |
sad. -0.10 ruf. -0.79 dom. +0.02 bre. +0.05 |
HIS | chainID: qc, resSeq: 98, molecule: Apocytochrome b |
oxidoreductase oligomeric count: 326 pocket vol.: 430.0 Å3 d(Fe-oop): 0.009 Å |
| HIS | chainID: qc, resSeq: 199, molecule: Apocytochrome b |
|||
8gym-qd-401 |
sad. +0.01 ruf. -0.10 dom. -0.06 bre. -0.08 |
HIS | chainID: qd, resSeq: 85, molecule: Cytochrome protein c1 |
electron transporter oligomeric count: 326 pocket vol.: 380.0 Å3 d(Fe-oop): 0.026 Å |
| MET | chainID: qd, resSeq: 209, molecule: Cytochrome protein c1 |
|||
8gym-2E-401 |
sad. +0.02 ruf. +0.29 dom. -0.03 bre. -0.07 |
HIS | chainID: 2E, resSeq: 260, molecule: NmrA domain-containing protein |
electron transporter oligomeric count: 326 pocket vol.: 555.0 Å3 d(Fe-oop): 0.010 Å |
| HIS | chainID: 2E, resSeq: 317, molecule: NmrA domain-containing protein |
|||
8gym-C1-702 |
sad. -0.03 ruf. +0.35 dom. +0.21 bre. -0.41 |
HIS | chainID: C1, resSeq: 101, molecule: Cytochrome c oxidase subunit 1 |
translocase oligomeric count: 326 pocket vol.: 559.0 Å3 d(Fe-oop): 0.015 Å |
| HIS | chainID: C1, resSeq: 528, molecule: Cytochrome c oxidase subunit 1 |
|||
8gym-C1-703 |
sad. +0.04 ruf. -0.01 dom. -0.03 bre. -0.42 |
HIS | chainID: C1, resSeq: 526, molecule: Cytochrome c oxidase subunit 1 |
translocase oligomeric count: 326 pocket vol.: 676.0 Å3 d(Fe-oop): 0.057 Å |
| Not assigned. | ||||
8gym-QC-501 |
sad. +0.04 ruf. +0.64 dom. +0.06 bre. +0.03 |
HIS | chainID: QC, resSeq: 84, molecule: Apocytochrome b |
oxidoreductase oligomeric count: 326 pocket vol.: 384.0 Å3 d(Fe-oop): 0.023 Å |
| HIS | chainID: QC, resSeq: 185, molecule: Apocytochrome b |
|||
8gym-QC-502 |
sad. -0.11 ruf. -0.79 dom. +0.10 bre. +0.05 |
HIS | chainID: QC, resSeq: 98, molecule: Apocytochrome b |
oxidoreductase oligomeric count: 326 pocket vol.: 398.0 Å3 d(Fe-oop): 0.035 Å |
| HIS | chainID: QC, resSeq: 199, molecule: Apocytochrome b |
|||
8gym-QD-401 |
sad. +0.01 ruf. -0.11 dom. -0.06 bre. -0.07 |
HIS | chainID: QD, resSeq: 85, molecule: Cytochrome protein c1 |
electron transporter oligomeric count: 326 pocket vol.: 379.0 Å3 d(Fe-oop): 0.028 Å |
| MET | chainID: QD, resSeq: 209, molecule: Cytochrome protein c1 |
|||
8gym-Qc-502 |
sad. +0.03 ruf. +0.66 dom. +0.05 bre. +0.03 |
HIS | chainID: Qc, resSeq: 84, molecule: Apocytochrome b |
oxidoreductase oligomeric count: 326 pocket vol.: 372.0 Å3 d(Fe-oop): 0.019 Å |
| HIS | chainID: Qc, resSeq: 185, molecule: Apocytochrome b |
|||
8gym-Qc-503 |
sad. -0.10 ruf. -0.79 dom. +0.02 bre. +0.05 |
HIS | chainID: Qc, resSeq: 98, molecule: Apocytochrome b |
oxidoreductase oligomeric count: 326 pocket vol.: 400.0 Å3 d(Fe-oop): 0.009 Å |
| HIS | chainID: Qc, resSeq: 199, molecule: Apocytochrome b |
|||
8gym-Qd-401 |
sad. +0.01 ruf. -0.12 dom. -0.06 bre. -0.08 |
HIS | chainID: Qd, resSeq: 85, molecule: Cytochrome protein c1 |
electron transporter oligomeric count: 326 pocket vol.: 382.0 Å3 d(Fe-oop): 0.026 Å |
| MET | chainID: Qd, resSeq: 209, molecule: Cytochrome protein c1 |
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