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PyDISH No: 16852

PDB: 8e7s,
chainID: k, resSeq: 603
heme type: A

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 3.2 Å

axial ligand #1: HIS

chainID: k,
resSeq: 62,
Coordination distance[Å]: 2.226
molecule: Cytochrome c oxidase subunit 1
EC number: 7.1.1.9
Organism: Saccharomyces cerevisiae

axial ligand #2: HIS

chainID: k,
resSeq: 378,
Coordination distance[Å]: 2.329
molecule: same as ligand #1

List of other hemes in pdb:8e7s

ID of heme	Distortion	Axial ligands on heme		Function & structure
8e7s-J-404	`sad. -0.00 ruf. +0.28 dom. +0.17 bre. +0.17`	HIS	chainID: J, resSeq: 82, molecule: Cytochrome b	translocase oligomeric count: 44 pocket vol.: 476.0 Å³ d(Fe-oop): 0.070 Å
8e7s-J-404	`sad. -0.00 ruf. +0.28 dom. +0.17 bre. +0.17`	HIS	chainID: J, resSeq: 183, molecule: Cytochrome b
8e7s-J-405	`sad. -0.03 ruf. -0.44 dom. -0.06 bre. +0.17`	HIS	chainID: J, resSeq: 96, molecule: Cytochrome b	translocase oligomeric count: 44 pocket vol.: 444.0 Å³ d(Fe-oop): 0.026 Å
8e7s-J-405	`sad. -0.03 ruf. -0.44 dom. -0.06 bre. +0.17`	HIS	chainID: J, resSeq: 197, molecule: Cytochrome b
8e7s-K-601	`sad. -0.01 ruf. +0.41 dom. +0.30 bre. -0.47`	HIS	chainID: K, resSeq: 376, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 44 pocket vol.: 827.0 Å³ d(Fe-oop): 0.115 Å
8e7s-K-601	`sad. -0.01 ruf. +0.41 dom. +0.30 bre. -0.47`	Not assigned.
8e7s-K-604	`sad. -0.04 ruf. +0.50 dom. +0.11 bre. -0.45`	HIS	chainID: K, resSeq: 62, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 44 pocket vol.: 740.0 Å³ d(Fe-oop): 0.048 Å
8e7s-K-604	`sad. -0.04 ruf. +0.50 dom. +0.11 bre. -0.45`	HIS	chainID: K, resSeq: 378, molecule: Cytochrome c oxidase subunit 1
8e7s-L-401	`sad. -0.05 ruf. -0.54 dom. +0.22 bre. +0.14`	HIS	chainID: L, resSeq: 105, molecule: Cytochrome c1, heme protein, mitochondrial	translocase oligomeric count: 44 pocket vol.: 437.0 Å³ d(Fe-oop): 0.087 Å
8e7s-L-401	`sad. -0.05 ruf. -0.54 dom. +0.22 bre. +0.14`	MET	chainID: L, resSeq: 225, molecule: Cytochrome c1, heme protein, mitochondrial
8e7s-j-403	`sad. +0.00 ruf. +0.19 dom. -0.10 bre. +0.16`	HIS	chainID: j, resSeq: 82, molecule: Cytochrome b	translocase oligomeric count: 44 pocket vol.: 469.0 Å³ d(Fe-oop): 0.039 Å
8e7s-j-403	`sad. +0.00 ruf. +0.19 dom. -0.10 bre. +0.16`	HIS	chainID: j, resSeq: 183, molecule: Cytochrome b
8e7s-j-404	`sad. -0.03 ruf. -0.79 dom. +0.21 bre. +0.20`	HIS	chainID: j, resSeq: 96, molecule: Cytochrome b	translocase oligomeric count: 44 pocket vol.: 404.0 Å³ d(Fe-oop): 0.086 Å
8e7s-j-404	`sad. -0.03 ruf. -0.79 dom. +0.21 bre. +0.20`	HIS	chainID: j, resSeq: 197, molecule: Cytochrome b
8e7s-k-604	`sad. -0.01 ruf. -0.13 dom. +0.22 bre. -0.52`	HIS	chainID: k, resSeq: 376, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 44 pocket vol.: 816.0 Å³ d(Fe-oop): 0.085 Å
8e7s-k-604	`sad. -0.01 ruf. -0.13 dom. +0.22 bre. -0.52`	Not assigned.
8e7s-l-401	`sad. -0.04 ruf. -0.98 dom. -0.13 bre. +0.20`	HIS	chainID: l, resSeq: 105, molecule: Cytochrome c1, heme protein, mitochondrial	translocase oligomeric count: 44 pocket vol.: 474.0 Å³ d(Fe-oop): 0.055 Å
8e7s-l-401	`sad. -0.04 ruf. -0.98 dom. -0.13 bre. +0.20`	MET	chainID: l, resSeq: 225, molecule: Cytochrome c1, heme protein, mitochondrial