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PyDISH No: 16848

PDB: 8e7s,
chainID: K, resSeq: 604
heme type: A

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 3.2 Å

axial ligand #1: HIS

chainID: K,
resSeq: 62,
Coordination distance[Å]: 2.197
molecule: Cytochrome c oxidase subunit 1
EC number: 7.1.1.9
Organism: Saccharomyces cerevisiae

axial ligand #2: HIS

chainID: K,
resSeq: 378,
Coordination distance[Å]: 2.307
molecule: same as ligand #1

List of other hemes in pdb:8e7s

ID of heme Distortion Axial ligands on heme Function & structure
8e7s-J-404
sad. -0.00
ruf. +0.28
dom. +0.17
bre. +0.17
HIS chainID: J,
resSeq: 82,
molecule: Cytochrome b
translocase
oligomeric count: 44
pocket vol.: 476.0 Å3
d(Fe-oop): 0.070 Å
HIS chainID: J, resSeq: 183,
molecule: Cytochrome b
8e7s-J-405
sad. -0.03
ruf. -0.44
dom. -0.06
bre. +0.17
HIS chainID: J,
resSeq: 96,
molecule: Cytochrome b
translocase
oligomeric count: 44
pocket vol.: 444.0 Å3
d(Fe-oop): 0.026 Å
HIS chainID: J, resSeq: 197,
molecule: Cytochrome b
8e7s-K-601
sad. -0.01
ruf. +0.41
dom. +0.30
bre. -0.47
HIS chainID: K,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 44
pocket vol.: 827.0 Å3
d(Fe-oop): 0.115 Å
Not assigned.
8e7s-L-401
sad. -0.05
ruf. -0.54
dom. +0.22
bre. +0.14
HIS chainID: L,
resSeq: 105,
molecule: Cytochrome c1, heme protein, mitochondrial
translocase
oligomeric count: 44
pocket vol.: 437.0 Å3
d(Fe-oop): 0.087 Å
MET chainID: L, resSeq: 225,
molecule: Cytochrome c1, heme protein, mitochondrial
8e7s-j-403
sad. +0.00
ruf. +0.19
dom. -0.10
bre. +0.16
HIS chainID: j,
resSeq: 82,
molecule: Cytochrome b
translocase
oligomeric count: 44
pocket vol.: 469.0 Å3
d(Fe-oop): 0.039 Å
HIS chainID: j, resSeq: 183,
molecule: Cytochrome b
8e7s-j-404
sad. -0.03
ruf. -0.79
dom. +0.21
bre. +0.20
HIS chainID: j,
resSeq: 96,
molecule: Cytochrome b
translocase
oligomeric count: 44
pocket vol.: 404.0 Å3
d(Fe-oop): 0.086 Å
HIS chainID: j, resSeq: 197,
molecule: Cytochrome b
8e7s-k-603
sad. -0.01
ruf. +0.77
dom. +0.17
bre. -0.47
HIS chainID: k,
resSeq: 62,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 44
pocket vol.: 736.0 Å3
d(Fe-oop): 0.069 Å
HIS chainID: k, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1
8e7s-k-604
sad. -0.01
ruf. -0.13
dom. +0.22
bre. -0.52
HIS chainID: k,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 44
pocket vol.: 816.0 Å3
d(Fe-oop): 0.085 Å
Not assigned.
8e7s-l-401
sad. -0.04
ruf. -0.98
dom. -0.13
bre. +0.20
HIS chainID: l,
resSeq: 105,
molecule: Cytochrome c1, heme protein, mitochondrial
translocase
oligomeric count: 44
pocket vol.: 474.0 Å3
d(Fe-oop): 0.055 Å
MET chainID: l, resSeq: 225,
molecule: Cytochrome c1, heme protein, mitochondrial