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PyDISH No: 16770

PDB: 8d9m,
chainID: A, resSeq: 603
heme type: C

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 4.2 Å
origomeric count: 7

axial ligand #1: HIS

chainID: A,
resSeq: 54,
Coordination distance[Å]: 2.05
molecule: Cytochrome c
Organism: Geobacter sulfurreducens

axial ligand #2: HIS

chainID: A,
resSeq: 120,
Coordination distance[Å]: 2.03
molecule: same as ligand #1

List of other hemes in pdb:8d9m

ID of heme	Distortion	Axial ligands on heme		Function & structure
8d9m-A-601	`sad. -0.09 ruf. +0.11 dom. -0.01 bre. -0.19`	HIS	chainID: A, resSeq: 65, molecule: Cytochrome c	electron transporter oligomeric count: 7 pocket vol.: 581.0 Å³ d(Fe-oop): 0.016 Å
8d9m-A-601	`sad. -0.09 ruf. +0.11 dom. -0.01 bre. -0.19`	HIS	chainID: A, resSeq: 93, molecule: Cytochrome c
8d9m-A-602	`sad. -0.08 ruf. +0.01 dom. -0.02 bre. -0.15`	HIS	chainID: A, resSeq: 64, molecule: Cytochrome c	electron transporter oligomeric count: 7 pocket vol.: 594.0 Å³ d(Fe-oop): 0.042 Å
8d9m-A-602	`sad. -0.08 ruf. +0.01 dom. -0.02 bre. -0.15`	HIS	chainID: A, resSeq: 115, molecule: Cytochrome c
8d9m-A-604	`sad. -0.05 ruf. +0.04 dom. -0.01 bre. -0.16`	HIS	chainID: A, resSeq: 121, molecule: Cytochrome c	electron transporter oligomeric count: 7 pocket vol.: 487.0 Å³ d(Fe-oop): 0.083 Å
8d9m-A-604	`sad. -0.05 ruf. +0.04 dom. -0.01 bre. -0.16`	HIS	chainID: A, resSeq: 135, molecule: Cytochrome c
8d9m-A-605	`sad. +0.06 ruf. +0.11 dom. -0.04 bre. -0.19`	HIS	chainID: A, resSeq: 206, molecule: Cytochrome c	electron transporter oligomeric count: 7 pocket vol.: 503.0 Å³ d(Fe-oop): 0.031 Å
8d9m-A-605	`sad. +0.06 ruf. +0.11 dom. -0.04 bre. -0.19`	HIS	chainID: A, resSeq: 233, molecule: Cytochrome c
8d9m-A-606	`sad. -0.03 ruf. +0.26 dom. -0.06 bre. -0.21`	HIS	chainID: A, resSeq: 207, molecule: Cytochrome c	electron transporter oligomeric count: 7 pocket vol.: 613.0 Å³ d(Fe-oop): 0.012 Å
8d9m-A-606	`sad. -0.03 ruf. +0.26 dom. -0.06 bre. -0.21`	HIS	chainID: A, resSeq: 218, molecule: Cytochrome c
8d9m-A-607	`sad. +0.03 ruf. -0.04 dom. +0.02 bre. -0.19`	HIS	chainID: A, resSeq: 182, molecule: Cytochrome c	electron transporter oligomeric count: 7 pocket vol.: 509.0 Å³ d(Fe-oop): 0.044 Å
8d9m-A-607	`sad. +0.03 ruf. -0.04 dom. +0.02 bre. -0.19`	HIS	chainID: A, resSeq: 265, molecule: Cytochrome c
8d9m-A-608	`sad. -0.04 ruf. +0.08 dom. -0.05 bre. -0.12`	HIS	chainID: A, resSeq: 239, molecule: Cytochrome c	electron transporter oligomeric count: 7 pocket vol.: 504.0 Å³ d(Fe-oop): 0.059 Å
8d9m-A-608	`sad. -0.04 ruf. +0.08 dom. -0.05 bre. -0.12`	HIS	chainID: A, resSeq: 276, molecule: Cytochrome c