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PyDISH No: 16687

PDB: 8bcx,
chainID: B, resSeq: 503
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.941 Å

axial ligand #1: HIS

chainID: B,
resSeq: 294,
Coordination distance[Å]: 2.016
molecule: Nitrite reductase (cytochrome; ammonia-forming)
EC number: 1.7.2.2
Organism: Geobacter metallireducens GS-15

axial ligand #2: HIS

chainID: B,
resSeq: 336,
Coordination distance[Å]: 2.018
molecule: same as ligand #1

List of other hemes in pdb:8bcx

ID of heme	Distortion	Axial ligands on heme		Function & structure
8bcx-A-501	`sad. -0.13 ruf. -0.38 dom. -0.14 bre. -0.29`	HIS	chainID: A, resSeq: 294, molecule: Nitrite reductase (cytochrome; ammonia-forming)	oxidoreductase oligomeric count: 1 pocket vol.: 581.0 Å³ d(Fe-oop): 0.001 Å
8bcx-A-501	`sad. -0.13 ruf. -0.38 dom. -0.14 bre. -0.29`	HIS	chainID: A, resSeq: 336, molecule: Nitrite reductase (cytochrome; ammonia-forming)
8bcx-A-502	`sad. +0.31 ruf. -0.42 dom. +0.04 bre. -0.32`	LYS	chainID: A, resSeq: 137, molecule: Nitrite reductase (cytochrome; ammonia-forming)	oxidoreductase oligomeric count: 1 pocket vol.: 532.0 Å³ d(Fe-oop): 0.066 Å
8bcx-A-502	`sad. +0.31 ruf. -0.42 dom. +0.04 bre. -0.32`	HOH	chainID: A, resSeq: 619, molecule: water
8bcx-A-503	`sad. +0.37 ruf. -1.07 dom. -0.07 bre. -0.20`	HIS	chainID: A, resSeq: 305, molecule: Nitrite reductase (cytochrome; ammonia-forming)	oxidoreductase oligomeric count: 1 pocket vol.: 435.0 Å³ d(Fe-oop): 0.008 Å
8bcx-A-503	`sad. +0.37 ruf. -1.07 dom. -0.07 bre. -0.20`	HIS	chainID: A, resSeq: 416, molecule: Nitrite reductase (cytochrome; ammonia-forming)
8bcx-A-504	`sad. -0.40 ruf. -0.71 dom. -0.08 bre. -0.25`	HIS	chainID: A, resSeq: 112, molecule: Nitrite reductase (cytochrome; ammonia-forming)	oxidoreductase oligomeric count: 1 pocket vol.: 538.0 Å³ d(Fe-oop): 0.024 Å
8bcx-A-504	`sad. -0.40 ruf. -0.71 dom. -0.08 bre. -0.25`	HIS	chainID: A, resSeq: 222, molecule: Nitrite reductase (cytochrome; ammonia-forming)
8bcx-A-505	`sad. +0.38 ruf. -0.57 dom. -0.27 bre. -0.29`	HIS	chainID: A, resSeq: 179, molecule: Nitrite reductase (cytochrome; ammonia-forming)	oxidoreductase oligomeric count: 1 pocket vol.: 439.0 Å³ d(Fe-oop): 0.064 Å
8bcx-A-505	`sad. +0.38 ruf. -0.57 dom. -0.27 bre. -0.29`	HIS	chainID: A, resSeq: 319, molecule: Nitrite reductase (cytochrome; ammonia-forming)
8bcx-B-501	`sad. +0.25 ruf. -0.27 dom. +0.10 bre. -0.32`	LYS	chainID: B, resSeq: 137, molecule: Nitrite reductase (cytochrome; ammonia-forming)	oxidoreductase oligomeric count: 1 pocket vol.: 521.0 Å³ d(Fe-oop): 0.102 Å
8bcx-B-501	`sad. +0.25 ruf. -0.27 dom. +0.10 bre. -0.32`	HOH	chainID: B, resSeq: 614, molecule: water
8bcx-B-502	`sad. +0.50 ruf. -1.05 dom. -0.01 bre. -0.22`	HIS	chainID: B, resSeq: 305, molecule: Nitrite reductase (cytochrome; ammonia-forming)	oxidoreductase oligomeric count: 1 pocket vol.: 459.0 Å³ d(Fe-oop): 0.057 Å
8bcx-B-502	`sad. +0.50 ruf. -1.05 dom. -0.01 bre. -0.22`	HIS	chainID: B, resSeq: 416, molecule: Nitrite reductase (cytochrome; ammonia-forming)
8bcx-B-504	`sad. -0.41 ruf. -0.71 dom. -0.04 bre. -0.25`	HIS	chainID: B, resSeq: 112, molecule: Nitrite reductase (cytochrome; ammonia-forming)	oxidoreductase oligomeric count: 1 pocket vol.: 533.0 Å³ d(Fe-oop): 0.001 Å
8bcx-B-504	`sad. -0.41 ruf. -0.71 dom. -0.04 bre. -0.25`	HIS	chainID: B, resSeq: 222, molecule: Nitrite reductase (cytochrome; ammonia-forming)
8bcx-B-505	`sad. +0.34 ruf. -0.59 dom. -0.27 bre. -0.29`	HIS	chainID: B, resSeq: 179, molecule: Nitrite reductase (cytochrome; ammonia-forming)	oxidoreductase oligomeric count: 1 pocket vol.: 456.0 Å³ d(Fe-oop): 0.083 Å
8bcx-B-505	`sad. +0.34 ruf. -0.59 dom. -0.27 bre. -0.29`	HIS	chainID: B, resSeq: 319, molecule: Nitrite reductase (cytochrome; ammonia-forming)
8bcx-C-501	`sad. -0.10 ruf. -0.67 dom. -0.06 bre. -0.26`	HIS	chainID: C, resSeq: 294, molecule: Nitrite reductase (cytochrome; ammonia-forming)	oxidoreductase oligomeric count: 1 pocket vol.: 555.0 Å³ d(Fe-oop): 0.041 Å
8bcx-C-501	`sad. -0.10 ruf. -0.67 dom. -0.06 bre. -0.26`	HIS	chainID: C, resSeq: 336, molecule: Nitrite reductase (cytochrome; ammonia-forming)
8bcx-C-502	`sad. +0.57 ruf. -1.07 dom. +0.02 bre. -0.20`	HIS	chainID: C, resSeq: 305, molecule: Nitrite reductase (cytochrome; ammonia-forming)	oxidoreductase oligomeric count: 1 pocket vol.: 446.0 Å³ d(Fe-oop): 0.082 Å
8bcx-C-502	`sad. +0.57 ruf. -1.07 dom. +0.02 bre. -0.20`	HIS	chainID: C, resSeq: 416, molecule: Nitrite reductase (cytochrome; ammonia-forming)
8bcx-C-503	`sad. +0.27 ruf. -0.29 dom. +0.08 bre. -0.31`	LYS	chainID: C, resSeq: 137, molecule: Nitrite reductase (cytochrome; ammonia-forming)	oxidoreductase oligomeric count: 1 pocket vol.: 489.0 Å³ d(Fe-oop): 0.023 Å
8bcx-C-503	`sad. +0.27 ruf. -0.29 dom. +0.08 bre. -0.31`	HOH	chainID: C, resSeq: 613, molecule: water
8bcx-C-504	`sad. -0.41 ruf. -0.67 dom. -0.07 bre. -0.25`	HIS	chainID: C, resSeq: 112, molecule: Nitrite reductase (cytochrome; ammonia-forming)	oxidoreductase oligomeric count: 1 pocket vol.: 489.0 Å³ d(Fe-oop): 0.032 Å
8bcx-C-504	`sad. -0.41 ruf. -0.67 dom. -0.07 bre. -0.25`	HIS	chainID: C, resSeq: 222, molecule: Nitrite reductase (cytochrome; ammonia-forming)
8bcx-C-505	`sad. +0.37 ruf. -0.61 dom. -0.26 bre. -0.27`	HIS	chainID: C, resSeq: 179, molecule: Nitrite reductase (cytochrome; ammonia-forming)	oxidoreductase oligomeric count: 1 pocket vol.: 422.0 Å³ d(Fe-oop): 0.005 Å
8bcx-C-505	`sad. +0.37 ruf. -0.61 dom. -0.26 bre. -0.27`	HIS	chainID: C, resSeq: 319, molecule: Nitrite reductase (cytochrome; ammonia-forming)
8bcx-D-501	`sad. +0.41 ruf. -0.53 dom. -0.27 bre. -0.22`	HIS	chainID: D, resSeq: 179, molecule: Nitrite reductase (cytochrome; ammonia-forming)	oxidoreductase oligomeric count: 1 pocket vol.: 411.0 Å³ d(Fe-oop): 0.001 Å
8bcx-D-501	`sad. +0.41 ruf. -0.53 dom. -0.27 bre. -0.22`	HIS	chainID: D, resSeq: 319, molecule: Nitrite reductase (cytochrome; ammonia-forming)
8bcx-D-502	`sad. -0.23 ruf. -0.64 dom. -0.03 bre. -0.25`	HIS	chainID: D, resSeq: 294, molecule: Nitrite reductase (cytochrome; ammonia-forming)	oxidoreductase oligomeric count: 1 pocket vol.: 584.0 Å³ d(Fe-oop): 0.052 Å
8bcx-D-502	`sad. -0.23 ruf. -0.64 dom. -0.03 bre. -0.25`	HIS	chainID: D, resSeq: 336, molecule: Nitrite reductase (cytochrome; ammonia-forming)
8bcx-D-503	`sad. +0.43 ruf. -1.14 dom. -0.01 bre. -0.18`	HIS	chainID: D, resSeq: 305, molecule: Nitrite reductase (cytochrome; ammonia-forming)	oxidoreductase oligomeric count: 1 pocket vol.: 444.0 Å³ d(Fe-oop): 0.022 Å
8bcx-D-503	`sad. +0.43 ruf. -1.14 dom. -0.01 bre. -0.18`	HIS	chainID: D, resSeq: 416, molecule: Nitrite reductase (cytochrome; ammonia-forming)
8bcx-D-504	`sad. -0.40 ruf. -0.70 dom. -0.06 bre. -0.25`	HIS	chainID: D, resSeq: 112, molecule: Nitrite reductase (cytochrome; ammonia-forming)	oxidoreductase oligomeric count: 1 pocket vol.: 496.0 Å³ d(Fe-oop): 0.004 Å
8bcx-D-504	`sad. -0.40 ruf. -0.70 dom. -0.06 bre. -0.25`	HIS	chainID: D, resSeq: 222, molecule: Nitrite reductase (cytochrome; ammonia-forming)
8bcx-D-505	`sad. +0.28 ruf. -0.31 dom. +0.12 bre. -0.31`	LYS	chainID: D, resSeq: 137, molecule: Nitrite reductase (cytochrome; ammonia-forming)	oxidoreductase oligomeric count: 1 pocket vol.: 459.0 Å³ d(Fe-oop): 0.112 Å
8bcx-D-505	`sad. +0.28 ruf. -0.31 dom. +0.12 bre. -0.31`	HOH	chainID: D, resSeq: 616, molecule: water