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PyDISH No: 16676

PDB: 8b6j,
chainID: D, resSeq: 401
heme type: C

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.8 Å

axial ligand #1: HIS

chainID: D,
resSeq: 85,
Coordination distance[Å]: 2.082
molecule: Cytochrome protein c1
Organism: Tetrahymena thermophila SB210

axial ligand #2: MET

chainID: D,
resSeq: 209,
Coordination distance[Å]: 2.817
molecule: same as ligand #1

List of other hemes in pdb:8b6j

ID of heme Distortion Axial ligands on heme Function & structure
8b6j-C-501
sad. +0.14
ruf. -0.64
dom. -0.30
bre. -0.13
HIS chainID: C,
resSeq: 84,
molecule: Apocytochrome b
oxidoreductase
oligomeric count: 24
pocket vol.: 381.0 Å3
d(Fe-oop): 0.028 Å
HIS chainID: C, resSeq: 185,
molecule: Apocytochrome b
8b6j-C-502
sad. -0.53
ruf. -0.89
dom. +0.34
bre. -0.04
HIS chainID: C,
resSeq: 98,
molecule: Apocytochrome b
oxidoreductase
oligomeric count: 24
pocket vol.: 417.0 Å3
d(Fe-oop): 0.064 Å
HIS chainID: C, resSeq: 199,
molecule: Apocytochrome b
8b6j-c-501
sad. +0.21
ruf. -0.60
dom. +0.10
bre. -0.13
HIS chainID: c,
resSeq: 84,
molecule: Apocytochrome b
oxidoreductase
oligomeric count: 24
pocket vol.: 392.0 Å3
d(Fe-oop): 0.101 Å
HIS chainID: c, resSeq: 185,
molecule: Apocytochrome b
8b6j-c-502
sad. -0.90
ruf. -0.91
dom. +0.22
bre. -0.02
HIS chainID: c,
resSeq: 98,
molecule: Apocytochrome b
oxidoreductase
oligomeric count: 24
pocket vol.: 422.0 Å3
d(Fe-oop): 0.066 Å
HIS chainID: c, resSeq: 199,
molecule: Apocytochrome b
8b6j-d-802
sad. -0.01
ruf. -0.01
dom. +0.10
bre. -0.25
HIS chainID: d,
resSeq: 85,
molecule: Cytochrome protein c1
electron transporter
oligomeric count: 24
pocket vol.: 364.0 Å3
d(Fe-oop): 0.048 Å
MET chainID: d, resSeq: 209,
molecule: Cytochrome protein c1