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PyDISH No: 16671

PDB: 8b6h,
chainID: Da, resSeq: 701
heme type: A

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 2.6 Å

axial ligand #1: HIS

chainID: Da,
resSeq: 101,
Coordination distance[Å]: 2.704
molecule: Cytochrome c oxidase subunit 1
Organism: Tetrahymena thermophila SB210

axial ligand #2: HIS

chainID: Da,
resSeq: 528,
Coordination distance[Å]: 2.818
molecule: same as ligand #1

List of other hemes in pdb:8b6h

ID of heme Distortion Axial ligands on heme Function & structure
8b6h-DA-701
sad. -0.08
ruf. +0.01
dom. +0.18
bre. -0.63
HIS chainID: DA,
resSeq: 101,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 106
pocket vol.: 651.0 Å3
d(Fe-oop): 0.018 Å
HIS chainID: DA, resSeq: 528,
molecule: Cytochrome c oxidase subunit 1
8b6h-DA-702
sad. -0.04
ruf. -0.07
dom. +0.13
bre. -0.63
HIS chainID: DA,
resSeq: 526,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 106
pocket vol.: 774.0 Å3
d(Fe-oop): 0.019 Å
Not assigned.
8b6h-ED-602
sad. -0.06
ruf. -0.07
dom. +0.02
bre. -0.04
Not assigned. unclassified
oligomeric count: 106
pocket vol.: 795.0 Å3
d(Fe-oop): 0.043 Å
Not assigned.
8b6h-Da-702
sad. -0.03
ruf. -0.04
dom. +0.10
bre. -0.63
HIS chainID: Da,
resSeq: 526,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 106
pocket vol.: 749.0 Å3
d(Fe-oop): 0.017 Å
Not assigned.
8b6h-Ed-201
sad. -0.06
ruf. -0.02
dom. +0.10
bre. -0.04
CYS chainID: Ed,
resSeq: 42,
molecule: Ymf75
electron transporter
oligomeric count: 106
pocket vol.: 837.0 Å3
d(Fe-oop): 0.012 Å
Not assigned.