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PyDISH No: 16589

PDB: 8abi,
chainID: D, resSeq: 401
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: ELECTRON MICROSCOPY
resolution: 3.0 Å

axial ligand #1: HIS

chainID: D,
resSeq: 128,
Coordination distance[Å]: 2.004
molecule: YALI0A17468p
Organism: Yarrowia lipolytica

axial ligand #2: MET

chainID: D,
resSeq: 248,
Coordination distance[Å]: 2.216
molecule: same as ligand #1

List of other hemes in pdb:8abi

ID of heme Distortion Axial ligands on heme Function & structure
8abi-C-501
 sad. -0.01
ruf. -0.23
dom. -0.07
bre. +0.18
 HIS chainID: C,
resSeq: 82,
molecule: Cytochrome b		 oxidoreductase
oligomeric count: 20
pocket vol.: 389.0 Å3
d(Fe-oop): 0.031 Å
HIS chainID: C, resSeq: 183,
molecule: Cytochrome b
8abi-C-502
 sad. -0.59
ruf. -0.35
dom. +0.02
bre. +0.18
 HIS chainID: C,
resSeq: 96,
molecule: Cytochrome b		 oxidoreductase
oligomeric count: 20
pocket vol.: 381.0 Å3
d(Fe-oop): 0.137 Å
HIS chainID: C, resSeq: 197,
molecule: Cytochrome b
8abi-N-501
 sad. +0.08
ruf. -0.22
dom. -0.07
bre. +0.16
 HIS chainID: N,
resSeq: 82,
molecule: Cytochrome b		 oxidoreductase
oligomeric count: 20
pocket vol.: 400.0 Å3
d(Fe-oop): 0.027 Å
HIS chainID: N, resSeq: 183,
molecule: Cytochrome b
8abi-N-502
 sad. -0.62
ruf. -0.34
dom. +0.04
bre. +0.25
 HIS chainID: N,
resSeq: 96,
molecule: Cytochrome b		 oxidoreductase
oligomeric count: 20
pocket vol.: 370.0 Å3
d(Fe-oop): 0.096 Å
HIS chainID: N, resSeq: 197,
molecule: Cytochrome b
8abi-O-401
 sad. -0.05
ruf. -0.63
dom. +0.08
bre. -0.22
 HIS chainID: O,
resSeq: 128,
molecule: YALI0A17468p		 oxidoreductase
oligomeric count: 20
pocket vol.: 405.0 Å3
d(Fe-oop): 0.026 Å
MET chainID: O, resSeq: 248,
molecule: YALI0A17468p