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PyDISH No: 16583

PDB: 8abh,
chainID: D, resSeq: 401
heme type: C

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 3.0 Å

axial ligand #1: HIS

chainID: D,
resSeq: 128,
Coordination distance[Å]: 1.989
molecule: YALI0A17468p
Organism: Yarrowia lipolytica

axial ligand #2: MET

chainID: D,
resSeq: 248,
Coordination distance[Å]: 2.242
molecule: same as ligand #1

List of other hemes in pdb:8abh

ID of heme Distortion Axial ligands on heme Function & structure
8abh-C-501
 sad. +0.03
ruf. -0.22
dom. -0.03
bre. +0.20
 HIS chainID: C,
resSeq: 82,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 380.0 Å3
d(Fe-oop): 0.021 Å
HIS chainID: C, resSeq: 183,
molecule: Cytochrome b
8abh-C-502
 sad. -0.64
ruf. -0.34
dom. +0.04
bre. +0.20
 HIS chainID: C,
resSeq: 96,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 382.0 Å3
d(Fe-oop): 0.089 Å
HIS chainID: C, resSeq: 197,
molecule: Cytochrome b
8abh-N-501
 sad. +0.05
ruf. -0.21
dom. -0.06
bre. +0.21
 HIS chainID: N,
resSeq: 82,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 399.0 Å3
d(Fe-oop): 0.027 Å
HIS chainID: N, resSeq: 183,
molecule: Cytochrome b
8abh-N-502
 sad. -0.61
ruf. -0.33
dom. +0.02
bre. +0.28
 HIS chainID: N,
resSeq: 96,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 368.0 Å3
d(Fe-oop): 0.089 Å
HIS chainID: N, resSeq: 197,
molecule: Cytochrome b
8abh-O-401
 sad. -0.05
ruf. -0.61
dom. +0.06
bre. -0.20
 HIS chainID: O,
resSeq: 128,
molecule: YALI0A17468p		 translocase
oligomeric count: 20
pocket vol.: 398.0 Å3
d(Fe-oop): 0.025 Å
MET chainID: O, resSeq: 248,
molecule: YALI0A17468p