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PyDISH No: 16553

PDB: 8aba,
chainID: D, resSeq: 401
heme type: C

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 3.2 Å

axial ligand #1: HIS

chainID: D,
resSeq: 128,
Coordination distance[Å]: 2.011
molecule: YALI0A17468p
Organism: Yarrowia lipolytica

axial ligand #2: MET

chainID: D,
resSeq: 248,
Coordination distance[Å]: 2.178
molecule: same as ligand #1

List of other hemes in pdb:8aba

ID of heme Distortion Axial ligands on heme Function & structure
8aba-C-501
 sad. +0.06
ruf. -0.30
dom. -0.01
bre. +0.16
 HIS chainID: C,
resSeq: 82,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 410.0 Å3
d(Fe-oop): 0.000 Å
HIS chainID: C, resSeq: 183,
molecule: Cytochrome b
8aba-C-502
 sad. -0.55
ruf. -0.30
dom. +0.06
bre. +0.18
 HIS chainID: C,
resSeq: 96,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 378.0 Å3
d(Fe-oop): 0.104 Å
HIS chainID: C, resSeq: 197,
molecule: Cytochrome b
8aba-N-501
 sad. +0.05
ruf. -0.33
dom. +0.03
bre. +0.16
 HIS chainID: N,
resSeq: 82,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 387.0 Å3
d(Fe-oop): 0.022 Å
HIS chainID: N, resSeq: 183,
molecule: Cytochrome b
8aba-N-502
 sad. -0.58
ruf. -0.37
dom. +0.09
bre. +0.20
 HIS chainID: N,
resSeq: 96,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 380.0 Å3
d(Fe-oop): 0.075 Å
HIS chainID: N, resSeq: 197,
molecule: Cytochrome b
8aba-O-401
 sad. +0.01
ruf. -0.57
dom. +0.05
bre. -0.24
 HIS chainID: O,
resSeq: 128,
molecule: YALI0A17468p		 translocase
oligomeric count: 20
pocket vol.: 413.0 Å3
d(Fe-oop): 0.013 Å
MET chainID: O, resSeq: 248,
molecule: YALI0A17468p