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PyDISH No: 16547

PDB: 8ab9,
chainID: D, resSeq: 401
heme type: C

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 3.3 Å

axial ligand #1: HIS

chainID: D,
resSeq: 128,
Coordination distance[Å]: 2.013
molecule: YALI0A17468p
Organism: Yarrowia lipolytica

axial ligand #2: MET

chainID: D,
resSeq: 248,
Coordination distance[Å]: 2.199
molecule: same as ligand #1

List of other hemes in pdb:8ab9

ID of heme Distortion Axial ligands on heme Function & structure
8ab9-C-501
 sad. +0.15
ruf. -0.21
dom. -0.07
bre. +0.17
 HIS chainID: C,
resSeq: 82,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 397.0 Å3
d(Fe-oop): 0.003 Å
HIS chainID: C, resSeq: 183,
molecule: Cytochrome b
8ab9-C-502
 sad. -0.58
ruf. -0.30
dom. +0.03
bre. +0.18
 HIS chainID: C,
resSeq: 96,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 378.0 Å3
d(Fe-oop): 0.105 Å
HIS chainID: C, resSeq: 197,
molecule: Cytochrome b
8ab9-N-501
 sad. +0.07
ruf. -0.25
dom. -0.06
bre. +0.14
 HIS chainID: N,
resSeq: 82,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 385.0 Å3
d(Fe-oop): 0.001 Å
HIS chainID: N, resSeq: 183,
molecule: Cytochrome b
8ab9-N-502
 sad. -0.53
ruf. -0.29
dom. +0.13
bre. +0.21
 HIS chainID: N,
resSeq: 96,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 372.0 Å3
d(Fe-oop): 0.093 Å
HIS chainID: N, resSeq: 197,
molecule: Cytochrome b
8ab9-O-401
 sad. -0.09
ruf. -0.60
dom. +0.06
bre. -0.21
 HIS chainID: O,
resSeq: 128,
molecule: YALI0A17468p		 translocase
oligomeric count: 20
pocket vol.: 390.0 Å3
d(Fe-oop): 0.023 Å
MET chainID: O, resSeq: 248,
molecule: YALI0A17468p