Browser

clear
→ advanced search

PyDISH No: 16535

PDB: 8ab7,
chainID: D, resSeq: 401
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: ELECTRON MICROSCOPY
resolution: 3.3 Å

axial ligand #1: HIS

chainID: D,
resSeq: 128,
Coordination distance[Å]: 1.988
molecule: YALI0A17468p
Organism: Yarrowia lipolytica

axial ligand #2: MET

chainID: D,
resSeq: 248,
Coordination distance[Å]: 2.166
molecule: same as ligand #1

List of other hemes in pdb:8ab7

ID of heme Distortion Axial ligands on heme Function & structure
8ab7-C-501
 sad. -0.05
ruf. -0.21
dom. -0.13
bre. +0.26
 HIS chainID: C,
resSeq: 82,
molecule: Cytochrome b		 oxidoreductase
oligomeric count: 20
pocket vol.: 359.0 Å3
d(Fe-oop): 0.045 Å
HIS chainID: C, resSeq: 183,
molecule: Cytochrome b
8ab7-C-502
 sad. -0.63
ruf. -0.33
dom. -0.02
bre. +0.25
 HIS chainID: C,
resSeq: 96,
molecule: Cytochrome b		 oxidoreductase
oligomeric count: 20
pocket vol.: 350.0 Å3
d(Fe-oop): 0.110 Å
HIS chainID: C, resSeq: 197,
molecule: Cytochrome b
8ab7-N-501
 sad. -0.04
ruf. -0.21
dom. -0.12
bre. +0.27
 HIS chainID: N,
resSeq: 82,
molecule: Cytochrome b		 oxidoreductase
oligomeric count: 20
pocket vol.: 368.0 Å3
d(Fe-oop): 0.043 Å
HIS chainID: N, resSeq: 183,
molecule: Cytochrome b
8ab7-N-502
 sad. -0.62
ruf. -0.33
dom. +0.01
bre. +0.31
 HIS chainID: N,
resSeq: 96,
molecule: Cytochrome b		 oxidoreductase
oligomeric count: 20
pocket vol.: 341.0 Å3
d(Fe-oop): 0.080 Å
HIS chainID: N, resSeq: 197,
molecule: Cytochrome b
8ab7-O-401
 sad. -0.08
ruf. -0.61
dom. +0.06
bre. -0.11
 HIS chainID: O,
resSeq: 128,
molecule: YALI0A17468p		 oxidoreductase
oligomeric count: 20
pocket vol.: 383.0 Å3
d(Fe-oop): 0.019 Å
MET chainID: O, resSeq: 248,
molecule: YALI0A17468p