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PyDISH No: 16529

PDB: 8ab6,
chainID: D, resSeq: 401
heme type: C

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 2.0 Å

axial ligand #1: HIS

chainID: D,
resSeq: 128,
Coordination distance[Å]: 2.019
molecule: YALI0A17468p
Organism: Yarrowia lipolytica

axial ligand #2: MET

chainID: D,
resSeq: 248,
Coordination distance[Å]: 2.306
molecule: same as ligand #1

List of other hemes in pdb:8ab6

ID of heme Distortion Axial ligands on heme Function & structure
8ab6-C-501
 sad. +0.10
ruf. -0.28
dom. -0.03
bre. -0.03
 HIS chainID: C,
resSeq: 82,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 397.0 Å3
d(Fe-oop): 0.007 Å
HIS chainID: C, resSeq: 183,
molecule: Cytochrome b
8ab6-C-502
 sad. -0.57
ruf. -0.40
dom. +0.12
bre. +0.01
 HIS chainID: C,
resSeq: 96,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 387.0 Å3
d(Fe-oop): 0.068 Å
HIS chainID: C, resSeq: 197,
molecule: Cytochrome b
8ab6-N-501
 sad. +0.10
ruf. -0.28
dom. -0.03
bre. -0.04
 HIS chainID: N,
resSeq: 82,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 385.0 Å3
d(Fe-oop): 0.007 Å
HIS chainID: N, resSeq: 183,
molecule: Cytochrome b
8ab6-N-502
 sad. -0.57
ruf. -0.40
dom. +0.10
bre. +0.06
 HIS chainID: N,
resSeq: 96,
molecule: Cytochrome b		 electron transporter
oligomeric count: 20
pocket vol.: 371.0 Å3
d(Fe-oop): 0.068 Å
HIS chainID: N, resSeq: 197,
molecule: Cytochrome b
8ab6-O-401
 sad. -0.05
ruf. -0.46
dom. +0.05
bre. -0.38
 HIS chainID: O,
resSeq: 128,
molecule: YALI0A17468p		 translocase
oligomeric count: 20
pocket vol.: 441.0 Å3
d(Fe-oop): 0.016 Å
MET chainID: O, resSeq: 248,
molecule: YALI0A17468p