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PyDISH No: 16383

PDB: 7ypy,
chainID: A, resSeq: 602
heme type: A

distortion

Protein data

function: translocase
experiment: X-RAY DIFFRACTION
resolution: 1.5 Å
origomeric count: 13

axial ligand #1: HIS

chainID: A,
resSeq: 376,
Coordination distance[Å]: 2.086
molecule: Cytochrome c oxidase subunit 1
EC number: 7.1.1.9
Organism: Bos taurus

axial ligand #2: PER

chainID: A,
resSeq: 606,
Coordination distance[Å]: 2.232
molecule: PEROXIDE ION

List of other hemes in pdb:7ypy

ID of heme Distortion Axial ligands on heme Function & structure
7ypy-A-601
sad. -0.59
ruf. -0.03
dom. +0.24
bre. -0.01
HIS chainID: A,
resSeq: 61,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 13
pocket vol.: 551.0 Å3
d(Fe-oop): 0.035 Å
HIS chainID: A, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1
7ypy-N-601
sad. -0.51
ruf. -0.03
dom. +0.21
bre. -0.03
HIS chainID: N,
resSeq: 61,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 13
pocket vol.: 558.0 Å3
d(Fe-oop): 0.037 Å
HIS chainID: N, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1
7ypy-N-602
sad. -0.39
ruf. -0.10
dom. +0.38
bre. -0.20
HIS chainID: N,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 13
pocket vol.: 655.0 Å3
d(Fe-oop): 0.082 Å
PER chainID: N, resSeq: 606,
molecule: PEROXIDE ION