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Protein data
function: electron transporterexperiment: ELECTRON MICROSCOPY
resolution: 4.3 Å
axial ligand #1: HIS
chainID: vm,resSeq: 41,
Coordination distance[Å]: 2.982
molecule: Cytochrome c550
Organism: Porphyridium purpureum
axial ligand #2: HIS
chainID: vm,resSeq: 92,
Coordination distance[Å]: 2.878
molecule: same as ligand #1
List of other hemes in pdb:7y7a
| ID of heme | Distortion | Axial ligands on heme | Function & structure | |
|---|---|---|---|---|
7y7a-G7-201 |
sad. +0.53 ruf. -0.64 dom. -0.10 bre. -0.17 |
HIS | chainID: G7, resSeq: 43, molecule: Cytochrome c6 |
electron transporter oligomeric count: 1792 pocket vol.: 356.0 Å3 d(Fe-oop): 0.011 Å |
| MET | chainID: G7, resSeq: 83, molecule: Cytochrome c6 |
|||
7y7a-F9-102 |
sad. +0.88 ruf. -0.31 dom. -0.70 bre. +0.23 |
HIS | chainID: F9, resSeq: 24, molecule: Cytochrome b559 subunit beta |
electron transporter oligomeric count: 1792 pocket vol.: 532.0 Å3 d(Fe-oop): 0.024 Å |
| Not assigned. | ||||
7y7a-V9-201 |
sad. +0.08 ruf. -0.41 dom. +0.12 bre. +0.12 |
HIS | chainID: V9, resSeq: 41, molecule: Cytochrome c550 |
electron transporter oligomeric count: 1792 pocket vol.: 497.0 Å3 d(Fe-oop): 0.041 Å |
| HIS | chainID: V9, resSeq: 92, molecule: Cytochrome c550 |
|||
7y7a-f9-102 |
sad. +0.71 ruf. -0.03 dom. -0.53 bre. +0.14 |
HIS | chainID: e9, resSeq: 23, molecule: Cytochrome b559 subunit alpha |
electron transporter oligomeric count: 1792 pocket vol.: 486.0 Å3 d(Fe-oop): 0.025 Å |
| HIS | chainID: f9, resSeq: 24, molecule: Cytochrome b559 subunit beta |
|||
7y7a-v9-201 |
sad. +0.08 ruf. -0.41 dom. +0.12 bre. +0.12 |
HIS | chainID: v9, resSeq: 41, molecule: Cytochrome c550 |
electron transporter oligomeric count: 1792 pocket vol.: 535.0 Å3 d(Fe-oop): 0.042 Å |
| HIS | chainID: v9, resSeq: 92, molecule: Cytochrome c550 |
|||
7y7a-FE-102 |
sad. +0.88 ruf. -0.32 dom. -0.70 bre. +0.23 |
HIS | chainID: FE, resSeq: 24, molecule: Cytochrome b559 subunit beta |
electron transporter oligomeric count: 1792 pocket vol.: 516.0 Å3 d(Fe-oop): 0.024 Å |
| Not assigned. | ||||
7y7a-VE-201 |
sad. +0.08 ruf. -0.41 dom. +0.12 bre. +0.12 |
HIS | chainID: VE, resSeq: 41, molecule: Cytochrome c550 |
electron transporter oligomeric count: 1792 pocket vol.: 483.0 Å3 d(Fe-oop): 0.042 Å |
| HIS | chainID: VE, resSeq: 92, molecule: Cytochrome c550 |
|||
7y7a-fE-102 |
sad. +0.70 ruf. -0.03 dom. -0.53 bre. +0.14 |
HIS | chainID: eE, resSeq: 23, molecule: Cytochrome b559 subunit alpha |
electron transporter oligomeric count: 1792 pocket vol.: 480.0 Å3 d(Fe-oop): 0.026 Å |
| HIS | chainID: fE, resSeq: 24, molecule: Cytochrome b559 subunit beta |
|||
7y7a-vE-201 |
sad. +0.08 ruf. -0.41 dom. +0.12 bre. +0.12 |
HIS | chainID: vE, resSeq: 41, molecule: Cytochrome c550 |
electron transporter oligomeric count: 1792 pocket vol.: 501.0 Å3 d(Fe-oop): 0.042 Å |
| HIS | chainID: vE, resSeq: 92, molecule: Cytochrome c550 |
|||
7y7a-EO-101 |
sad. +0.20 ruf. -0.06 dom. -0.11 bre. -0.03 |
Not assigned. | unclassified oligomeric count: 1792 pocket vol.: 598.0 Å3 d(Fe-oop): 0.058 Å |
|
| Not assigned. | ||||
7y7a-VO-201 |
sad. -0.01 ruf. -0.78 dom. +0.10 bre. +0.11 |
HIS | chainID: VO, resSeq: 41, molecule: Cytochrome c550 |
electron transporter oligomeric count: 1792 pocket vol.: 462.0 Å3 d(Fe-oop): 0.026 Å |
| HIS | chainID: VO, resSeq: 92, molecule: Cytochrome c550 |
|||
7y7a-fO-101 |
sad. +0.26 ruf. -0.05 dom. -0.35 bre. -0.03 |
HIS | chainID: eO, resSeq: 23, molecule: Cytochrome b559 subunit alpha |
electron transporter oligomeric count: 1792 pocket vol.: 476.0 Å3 d(Fe-oop): 0.004 Å |
| Not assigned. | ||||
7y7a-vO-201 |
sad. -0.00 ruf. -0.78 dom. +0.10 bre. +0.11 |
HIS | chainID: vO, resSeq: 41, molecule: Cytochrome c550 |
electron transporter oligomeric count: 1792 pocket vol.: 493.0 Å3 d(Fe-oop): 0.027 Å |
| HIS | chainID: vO, resSeq: 92, molecule: Cytochrome c550 |
|||
7y7a-EZ-101 |
sad. +0.20 ruf. -0.06 dom. -0.11 bre. -0.03 |
Not assigned. | unclassified oligomeric count: 1792 pocket vol.: 582.0 Å3 d(Fe-oop): 0.058 Å |
|
| Not assigned. | ||||
7y7a-VZ-201 |
sad. -0.01 ruf. -0.78 dom. +0.10 bre. +0.11 |
HIS | chainID: VZ, resSeq: 41, molecule: Cytochrome c550 |
electron transporter oligomeric count: 1792 pocket vol.: 460.0 Å3 d(Fe-oop): 0.026 Å |
| HIS | chainID: VZ, resSeq: 92, molecule: Cytochrome c550 |
|||
7y7a-fZ-101 |
sad. +0.26 ruf. -0.04 dom. -0.35 bre. -0.03 |
HIS | chainID: eZ, resSeq: 23, molecule: Cytochrome b559 subunit alpha |
electron transporter oligomeric count: 1792 pocket vol.: 460.0 Å3 d(Fe-oop): 0.004 Å |
| Not assigned. | ||||
7y7a-vZ-201 |
sad. -0.01 ruf. -0.78 dom. +0.10 bre. +0.11 |
HIS | chainID: vZ, resSeq: 41, molecule: Cytochrome c550 |
electron transporter oligomeric count: 1792 pocket vol.: 476.0 Å3 d(Fe-oop): 0.026 Å |
| HIS | chainID: vZ, resSeq: 92, molecule: Cytochrome c550 |
|||
7y7a-Fm-102 |
sad. +0.88 ruf. -0.31 dom. -0.70 bre. +0.23 |
HIS | chainID: Fm, resSeq: 24, molecule: Cytochrome b559 subunit beta |
electron transporter oligomeric count: 1792 pocket vol.: 509.0 Å3 d(Fe-oop): 0.024 Å |
| Not assigned. | ||||
7y7a-Vm-201 |
sad. +0.08 ruf. -0.41 dom. +0.12 bre. +0.12 |
HIS | chainID: Vm, resSeq: 41, molecule: Cytochrome c550 |
electron transporter oligomeric count: 1792 pocket vol.: 492.0 Å3 d(Fe-oop): 0.041 Å |
| HIS | chainID: Vm, resSeq: 92, molecule: Cytochrome c550 |
|||
7y7a-fm-102 |
sad. +0.70 ruf. -0.03 dom. -0.53 bre. +0.14 |
HIS | chainID: em, resSeq: 23, molecule: Cytochrome b559 subunit alpha |
electron transporter oligomeric count: 1792 pocket vol.: 486.0 Å3 d(Fe-oop): 0.025 Å |
| HIS | chainID: fm, resSeq: 24, molecule: Cytochrome b559 subunit beta |
|||
7y7a-Go-201 |
sad. +0.53 ruf. -0.64 dom. -0.10 bre. -0.17 |
HIS | chainID: Go, resSeq: 43, molecule: Cytochrome c6 |
electron transporter oligomeric count: 1792 pocket vol.: 361.0 Å3 d(Fe-oop): 0.009 Å |
| MET | chainID: Go, resSeq: 83, molecule: Cytochrome c6 |
|||