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PyDISH No: 16310

PDB: 7y6p,
chainID: Q, resSeq: 203
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: ELECTRON MICROSCOPY
resolution: 3.3 Å

axial ligand #1: MET

chainID: Q,
resSeq: 52,
Coordination distance[Å]: 2.101
molecule: Bacterioferritin
EC number: 1.16.3.1
Organism: Streptomyces coelicolor

axial ligand #2: MET

chainID: R,
resSeq: 52,
Coordination distance[Å]: 2.006
molecule: Bacterioferritin
EC number: 1.16.3.1
Organism: Streptomyces coelicolor

List of other hemes in pdb:7y6p

ID of heme Distortion Axial ligands on heme Function & structure
7y6p-A-203
sad. -0.62
ruf. -0.56
dom. +0.77
bre. +0.03
MET chainID: B,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 557.0 Å3
d(Fe-oop): 0.046 Å
Not assigned.
7y6p-C-203
sad. +0.44
ruf. -0.34
dom. +0.08
bre. -0.23
MET chainID: C,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 584.0 Å3
d(Fe-oop): 0.039 Å
MET chainID: D, resSeq: 52,
molecule: Bacterioferritin
7y6p-F-203
sad. -0.81
ruf. -0.54
dom. -0.01
bre. -0.04
MET chainID: F,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 451.0 Å3
d(Fe-oop): 0.009 Å
Not assigned.
7y6p-G-203
sad. -0.59
ruf. +0.50
dom. +0.19
bre. -0.16
MET chainID: G,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 603.0 Å3
d(Fe-oop): 0.145 Å
MET chainID: X, resSeq: 52,
molecule: Bacterioferritin
7y6p-H-203
sad. +0.23
ruf. -0.98
dom. +0.87
bre. +0.15
MET chainID: N,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 494.0 Å3
d(Fe-oop): 0.001 Å
Not assigned.
7y6p-J-203
sad. +0.28
ruf. +0.52
dom. -0.84
bre. -0.02
MET chainID: J,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 543.0 Å3
d(Fe-oop): 0.071 Å
Not assigned.
7y6p-L-203
sad. +0.65
ruf. +0.05
dom. +0.01
bre. -0.19
MET chainID: L,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 536.0 Å3
d(Fe-oop): 0.148 Å
MET chainID: M, resSeq: 52,
molecule: Bacterioferritin
7y6p-P-203
sad. -0.68
ruf. +0.08
dom. -0.23
bre. -0.17
MET chainID: O,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 537.0 Å3
d(Fe-oop): 0.127 Å
MET chainID: P, resSeq: 52,
molecule: Bacterioferritin
7y6p-S-203
sad. -0.84
ruf. -0.60
dom. +0.20
bre. -0.00
MET chainID: I,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 496.0 Å3
d(Fe-oop): 0.146 Å
MET chainID: S, resSeq: 52,
molecule: Bacterioferritin
7y6p-T-202
sad. -0.40
ruf. -0.99
dom. -0.31
bre. -0.07
MET chainID: U,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 505.0 Å3
d(Fe-oop): 0.189 Å
Not assigned.
7y6p-W-203
sad. +0.88
ruf. -0.09
dom. -0.16
bre. -0.17
MET chainID: V,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 505.0 Å3
d(Fe-oop): 0.110 Å
MET chainID: W, resSeq: 52,
molecule: Bacterioferritin