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PyDISH No: 16280

PDB: 7y6f,
chainID: F, resSeq: 203
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: ELECTRON MICROSCOPY
resolution: 2.7 Å

axial ligand #1: MET

chainID: E,
resSeq: 52,
Coordination distance[Å]: 2.911
molecule: Bacterioferritin
Organism: Streptomyces coelicolor

axial ligand #2: MET

chainID: F,
resSeq: 52,
Coordination distance[Å]: 2.828
molecule: Bacterioferritin
Organism: Streptomyces coelicolor

List of other hemes in pdb:7y6f

ID of heme Distortion Axial ligands on heme Function & structure
7y6f-A-203
sad. -0.84
ruf. -0.05
dom. +0.57
bre. -0.01
MET chainID: B,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 569.0 Å3
d(Fe-oop): 0.002 Å
Not assigned.
7y6f-C-203
sad. +0.37
ruf. -0.08
dom. -0.19
bre. -0.23
MET chainID: C,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 582.0 Å3
d(Fe-oop): 0.022 Å
MET chainID: D, resSeq: 52,
molecule: Bacterioferritin
7y6f-G-203
sad. -0.27
ruf. +0.35
dom. +0.45
bre. -0.18
MET chainID: G,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 603.0 Å3
d(Fe-oop): 0.017 Å
MET chainID: X, resSeq: 52,
molecule: Bacterioferritin
7y6f-H-203
sad. +0.08
ruf. -0.58
dom. +0.58
bre. -0.08
MET chainID: H,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 505.0 Å3
d(Fe-oop): 0.019 Å
MET chainID: N, resSeq: 52,
molecule: Bacterioferritin
7y6f-K-203
sad. +0.28
ruf. +0.28
dom. -0.67
bre. -0.02
MET chainID: J,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 571.0 Å3
d(Fe-oop): 0.006 Å
MET chainID: K, resSeq: 52,
molecule: Bacterioferritin
7y6f-L-203
sad. +0.48
ruf. -0.32
dom. +0.17
bre. -0.15
MET chainID: L,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 572.0 Å3
d(Fe-oop): 0.015 Å
MET chainID: M, resSeq: 52,
molecule: Bacterioferritin
7y6f-P-203
sad. -0.58
ruf. +0.24
dom. -0.10
bre. -0.16
MET chainID: O,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 564.0 Å3
d(Fe-oop): 0.093 Å
MET chainID: P, resSeq: 52,
molecule: Bacterioferritin
7y6f-Q-203
sad. +0.20
ruf. -0.30
dom. +0.51
bre. -0.20
MET chainID: Q,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 518.0 Å3
d(Fe-oop): 0.050 Å
MET chainID: R, resSeq: 52,
molecule: Bacterioferritin
7y6f-S-203
sad. -0.55
ruf. -0.83
dom. -0.22
bre. -0.04
MET chainID: I,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 511.0 Å3
d(Fe-oop): 0.068 Å
MET chainID: S, resSeq: 52,
molecule: Bacterioferritin
7y6f-T-202
sad. -0.34
ruf. -0.92
dom. -0.57
bre. -0.10
MET chainID: U,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 508.0 Å3
d(Fe-oop): 0.556 Å
Not assigned.
7y6f-W-203
sad. +0.43
ruf. +0.19
dom. -0.04
bre. -0.21
MET chainID: V,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 518.0 Å3
d(Fe-oop): 0.013 Å
MET chainID: W, resSeq: 52,
molecule: Bacterioferritin